View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9563_low_54 (Length: 225)
Name: NF9563_low_54
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_low_54 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 13482588 - 13482364
Alignment:
| Q |
1 |
agtagtgaaaaacagtaaaattatcacctatatgcaatagagatactaaactgcacttaatagtcaaaataataataattgaacaaaattctaaattagt |
100 |
Q |
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| T |
13482588 |
agtagtgaaaaacagtaaaattatcacctatatgcaatagagatactaaactgcacttaatagtcaaagtaataataattgaacaaaattctaaattagt |
13482489 |
T |
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| Q |
101 |
tactctcaaatcttaatatattacagcaaaatgcagccgtaattgcagttacacacctcaattaaaatatataattatgaataattttaataaaatagta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13482488 |
tactctcaaatcttaatatattacagcaaaatgcagccgtaattgcagttacacacctcaattaaaatatataattatgaatagttttaataaaatagta |
13482389 |
T |
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| Q |
201 |
gcaagattctgaattgtaaattaaa |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
13482388 |
gcaagattctgaattgtaaattaaa |
13482364 |
T |
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