View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9563_low_6 (Length: 420)

Name: NF9563_low_6
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9563_low_6
NF9563_low_6
[»] chr6 (1 HSPs)
chr6 (3-193)||(32185150-32185340)
[»] chr4 (2 HSPs)
chr4 (285-402)||(47708004-47708121)
chr4 (32-192)||(47708209-47708370)
[»] chr1 (2 HSPs)
chr1 (21-193)||(15283302-15283473)
chr1 (156-193)||(41614707-41614744)
[»] chr5 (5 HSPs)
chr5 (67-192)||(40168143-40168268)
chr5 (3-191)||(42258746-42258935)
chr5 (156-192)||(379381-379417)
chr5 (163-193)||(27679840-27679870)
chr5 (156-192)||(35100975-35101011)
[»] chr3 (1 HSPs)
chr3 (156-193)||(35216537-35216574)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 32185340 - 32185150
Alignment:
Q  3 taataataccaagtttatttatggtgtgaagagatggtggttagaccccttgacttgtttggggatcgactaacctatttttattgtatataacttatgt 102  Q
    ||||||| |||||||| ||||||||||| | ||||||||||  |||||||||||||||||| | |||||||||||| ||||| ||||||||||||| | |    
T  32185340 taataatgccaagtttgtttatggtgtgcaaagatggtggtcggaccccttgacttgtttgagtatcgactaacctgtttttcttgtatataacttgtat 32185241  T
Q  103 gacaaattgttatttggggtggtctgttcgatacaccttgtactcagaagcactcaccaccggtgttaatatattccatttttatgtcttc 193  Q
    |||| ||||||||||||||| ||||||||| ||||||||||||| || |||||||||| || |||||||||||||||||||||||||||||    
T  32185240 gacatattgttatttggggtagtctgttcggtacaccttgtactgaggagcactcaccgccagtgttaatatattccatttttatgtcttc 32185150  T

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Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 285 - 402
Target Start/End: Complemental strand, 47708121 - 47708004
Alignment:
Q  285 cacaattaagtgcctcccccatgacctcattcaaaaaacatttcatgaaacattaaccaactattcttaaccaaccatgagaagtgagcttgtcttctct 384  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47708121 cacaattaagtgcctcccccatgacctcattcaaaaaacgtttcatgaaacattaaccaactattcttaaccaaccatgagaagtgagcttgtcttctct 47708022  T
Q  385 aaagggttatagctagct 402  Q
    ||||||||||||||||||    
T  47708021 aaagggttatagctagct 47708004  T

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Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 32 - 192
Target Start/End: Complemental strand, 47708370 - 47708209
Alignment:
Q  32 agagatggtggttagaccccttgacttgtttggggatcgactaacctatttttattgtatataacttatgtgacaaattgttatttggggtggtctgttc 131  Q
    |||||||||||| ||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47708370 agagatggtggtcagaccccttgatttgtttggggatcgacgaacctgtttttattgtatataacttatgtgacagattgttatttggggtggtctgttc 47708271  T
Q  132 gatacacc-ttgtactcagaagcactcaccaccggtgttaatatattccatttttatgtctt 192  Q
    | |||||| ||||||| || |||||||||| || ||||||||||||||||||||||||||||    
T  47708270 ggtacacctttgtactgaggagcactcaccgccagtgttaatatattccatttttatgtctt 47708209  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 15283302 - 15283473
Alignment:
Q  21 ttatggtgtgaagagatggtggttagaccccttgacttgtttggggatcgactaacctatttttattgtatataacttatgtgacaaattgttatttggg 120  Q
    ||||||| || ||||||||||||  |||||||||||||||||||  ||||||| |||| | ||| |||||||||  || | ||||| ||||||  ||| |    
T  15283302 ttatggtttgcagagatggtggtcggaccccttgacttgtttggatatcgactgacctgtctttcttgtatatattttgtatgacagattgtttattgag 15283401  T
Q  121 gtggtctgttcgatacaccttgtactcagaagcactcaccaccggtgttaatatattccatttttatgtcttc 193  Q
    ||||||| |||| |||||||| || | || ||||| ||||||| ||||||||||||  || ||||||||||||    
T  15283402 gtggtctcttcggtacaccttatattgaggagcacacaccaccagtgttaatatatctca-ttttatgtcttc 15283473  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 41614707 - 41614744
Alignment:
Q  156 tcaccaccggtgttaatatattccatttttatgtcttc 193  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  41614707 tcaccaccgatgttaatatattctatttttatgtcttc 41614744  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 192
Target Start/End: Original strand, 40168143 - 40168268
Alignment:
Q  67 atcgactaacctatttttattgtatataacttatgtgacaaattgttatttggggtggtctgttcgatacaccttgtactcagaagcactcaccaccggt 166  Q
    ||||||| |||| ||| | | |||||||  |||| |||||  ||||| ||||| ||||||| || | |||| |||||||| |||||||| || | |||||    
T  40168143 atcgactgacctgtttctctcgtatatactttatatgacactttgttttttggagtggtctttttggtacatcttgtactgagaagcacacatcgccggt 40168242  T
Q  167 gttaatatattccatttttatgtctt 192  Q
    |||||||||| |||||||||||||||    
T  40168243 gttaatatatcccatttttatgtctt 40168268  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 191
Target Start/End: Complemental strand, 42258935 - 42258746
Alignment:
Q  3 taataataccaagtttatttatggtgtgaagagatggtggttagaccccttgacttgtttgggg-atcgactaacctatttttattgtatataacttatg 101  Q
    ||||||| |||||||| |||||||| || |||| |||| ||  || || |||  |||||||||| |||||||||| | | ||| |||||||||  || |     
T  42258935 taataatgccaagtttgtttatggtttgcagagttggtagtcggatcctttgttttgtttggggtatcgactaacatgtatttcttgtatatactttgta 42258836  T
Q  102 tgacaaattgttatttggggtggtctgttcgatacaccttgtactcagaagcactcaccaccggtgttaatatattccatttttatgtct 191  Q
    ||||   |||||  ||| |||||||| || | |||| |||||||| |||||||| || | |||||||||||||||| |||||||||||||    
T  42258835 tgactccttgtttcttgaggtggtctttttgctacatcttgtactgagaagcacacatcgccggtgttaatatatttcatttttatgtct 42258746  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 379417 - 379381
Alignment:
Q  156 tcaccaccggtgttaatatattccatttttatgtctt 192  Q
    ||||||||| |||||||||||||||||||||||||||    
T  379417 tcaccaccgatgttaatatattccatttttatgtctt 379381  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 193
Target Start/End: Original strand, 27679840 - 27679870
Alignment:
Q  163 cggtgttaatatattccatttttatgtcttc 193  Q
    |||||||||||||||||||||||||||||||    
T  27679840 cggtgttaatatattccatttttatgtcttc 27679870  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 35101011 - 35100975
Alignment:
Q  156 tcaccaccggtgttaatatattccatttttatgtctt 192  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  35101011 tcaccgccgttgttaatatattccatttttatgtctt 35100975  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 35216537 - 35216574
Alignment:
Q  156 tcaccaccggtgttaatatattccatttttatgtcttc 193  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  35216537 tcaccaccaatgttaatatattccatttttatgtcttc 35216574  T

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