View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9563_low_7 (Length: 411)
Name: NF9563_low_7
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_low_7 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: scaffold0004 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 123670 - 123281
Alignment:
| Q |
1 |
attacactgaattatgtgattcnnnnnnnaaattattagctgtgttggcgtgtcagtgtagtgtatccgtgcttcatactctatccagtggttagagtca |
100 |
Q |
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| T |
123670 |
attacactgaattatgtgattctttttttaaattattagctgtgttggcgtgtcagtgtagtgtatccgtgcttcatactctatctagtagttagagtca |
123571 |
T |
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| Q |
101 |
cgaattagagaatccagagttcaaactcaggccccc-gacagatagatagaattttactttggttgacttaaaaataagtttaaactacgaaccagtaaa |
199 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
123570 |
cgaattggagaatccagagttcaaactcaggccccccgacagatagatagaattttactttggttgacttaaaaataagtttaaactacgaaccagtaaa |
123471 |
T |
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| Q |
200 |
atgaggagtggagcgtcaggaggcaagcgacggtcgtcaccggaaacccagtcgagagcgactgacccgccatcttgagttctgaggcagtgacggcgga |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
123470 |
atgaggagtggagcgtcaggaggcaagcgacggtcgtcaccggaaacccagtcgagagcgactgacccgccatcttgagttctgaggcagtgacggcgga |
123371 |
T |
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| Q |
300 |
gggtgacgtcaggggttgatcggaaaaaggaagcgaagatggtttcgacgtggcggttccaagtgatgaaggggaaaggattgtaggggc |
389 |
Q |
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| T |
123370 |
gggtgacgtcaggggttgatcggaaaaaggaagcgaagatggtttcgacgtggcggttccaagtgatgaaggggaaagggttgtaggggc |
123281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 24894405 - 24894356
Alignment:
| Q |
30 |
aaattattagctgtgttggcgtgtcagtgt-agtgtatccgtgcttcata |
78 |
Q |
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| T |
24894405 |
aaattattagctgtgtcggcgtgtcagtgtccgtgtgtccgtgcttcata |
24894356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 48450630 - 48450659
Alignment:
| Q |
30 |
aaattattagctgtgttggcgtgtcagtgt |
59 |
Q |
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| T |
48450630 |
aaattattagctgtgttggcgtgtcagtgt |
48450659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 31672938 - 31672986
Alignment:
| Q |
30 |
aaattattagctgtgttggcgtgtcagtgtagtgtatccgtgcttcata |
78 |
Q |
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| T |
31672938 |
aaattattagctgtgtcggtgtgtcagtgtcccgtatccgtgcttcata |
31672986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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