View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9563_low_9 (Length: 408)
Name: NF9563_low_9
Description: NF9563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9563_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 48487901 - 48487483
Alignment:
| Q |
1 |
tttactttactttcatataaacatagtagatttatttattcatttatttt--------------ctctccttcattgttcgatttgctgatttgattttt |
86 |
Q |
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| T |
48487901 |
tttactttaccttcatataaacatagtagatttatttattcatttattttatttcatttattttctctccttcattgttcgatttgctgatttgattttt |
48487802 |
T |
|
| Q |
87 |
ggtggatctgaaataaattaatta-----ttgtgtgttgatcataatcacaaaaaagatgaaatctggaattcagaacctgaagcgatgtagtaagctag |
181 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48487801 |
ggtggatctgaaataaatgaattagggttttgtgtgttgatcataatcacaaaaaagatgaaatctggaattcagaatctgaagcgatgtagtaagctag |
48487702 |
T |
|
| Q |
182 |
aagaagaatctccactacagattcagaagaagcccaaactcaataacgccttttactctttccatgatggcgagatccactccaattcagcttccacaga |
281 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48487701 |
aagaagaatctccaccacagattcagaagaagcccaaactcaataacgccttttactctttccatgatggcgagatccactccaattcagcttccacaga |
48487602 |
T |
|
| Q |
282 |
tttgaatattgtagctgaaaatgcacctccattgtcgctatcatccagaggccgcgttaaaatgcttccatccaagttcaaggactccgtacttctcggt |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48487601 |
tttgaatattgtagctgaaaatgcacctccattgtcgcgagcatccagaggccgcgttaaaatgcttccatccaagttcaaggactccgtacttctcggt |
48487502 |
T |
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| Q |
382 |
acacagaagaagaataatc |
400 |
Q |
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| T |
48487501 |
acacagaagaagaataatc |
48487483 |
T |
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