View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9564_high_11 (Length: 304)
Name: NF9564_high_11
Description: NF9564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9564_high_11 |
 | |
|
| [»] scaffold0103 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 24 - 258
Target Start/End: Original strand, 5475571 - 5475805
Alignment:
| Q |
24 |
actaactattcccattcttgattagttacttcggtctcttatagtcacatcaatatttataaattgtctatttttatattggttgtttatagttgttgaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5475571 |
actaactattcccattcttgattagttactttgctctcttatagtcacatcaatatttataaatcgtctatttttatattggttgtttatagttgttgat |
5475670 |
T |
|
| Q |
124 |
ttttagatgttcaaataagattgnnnnnnncaaaaatatatttaacggtagttaactatttttcgttgctgaacaagagttaactaccgtttaatgcaag |
223 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || || |||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
5475671 |
ttttagatgttcaaataagattgttcttttcaaaaatatcttcaatggtagttaactatttttcgttgctgaacgagagttaactaccgtttagtgcaag |
5475770 |
T |
|
| Q |
224 |
gtggtaaatgtgttcaaaagttgcaagccaatgat |
258 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||| |
|
|
| T |
5475771 |
gtggtaaatgcgttcaaatgttgcaagccaatgat |
5475805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 10110915 - 10110999
Alignment:
| Q |
58 |
tctcttatagtcacatcaatatttataaattgtctatttttatattggttgtt-tatagttgttgaattttagatgttcaaataa |
141 |
Q |
| |
|
||||||||||||||||||||| |||||| | | |||||||||| | |||||| | ||||||||| ||||||||||||| |||| |
|
|
| T |
10110915 |
tctcttatagtcacatcaatagttataattgatgtatttttatactagttgttcaaaagttgttgatttttagatgttcatataa |
10110999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 146
Target Start/End: Complemental strand, 25614200 - 25614115
Alignment:
| Q |
62 |
ttatagtcacatcaatatttataaattgtctatttttatattggttgtt-tatagttgttgaattttagatgttcaaataagattg |
146 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||||||||||||||||| ||| |||||| |||| |||||||||||| |||| |
|
|
| T |
25614200 |
ttatagtcacatcattagttataaattgtgtatttttatattggttgttaaataattgttgtttttttaatgttcaaataacattg |
25614115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 43019827 - 43019878
Alignment:
| Q |
58 |
tctcttatagtcacatcaatatttataaattgtctatttttatattggttgt |
109 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| |||||||||| ||||||| |
|
|
| T |
43019827 |
tctcttatagtcacatcattagttataaattgtgtatttttataatggttgt |
43019878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 23822033 - 23822117
Alignment:
| Q |
58 |
tctcttatagtcacatcaatatttataaattgtctatttttatattggttgtt-tatagttgttgaattttagatgttcaaataa |
141 |
Q |
| |
|
||||||||||||||||||||| |||||| | | |||||||||| | |||||| | ||||||||||||||| ||||||| |||| |
|
|
| T |
23822033 |
tctcttatagtcacatcaatagttataattgatgtatttttatactagttgttcaaaagttgttgaattttaaatgttcatataa |
23822117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 32602100 - 32602168
Alignment:
| Q |
44 |
attagttacttcggtctcttatagtcacatcaatatttataaattgtctatttttatattggttgttta |
112 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| | |||||||| | |||||||||||| |||||||| |
|
|
| T |
32602100 |
attagttacttctctctcatatagtcacatcattcgttataaatgatgtatttttatattagttgttta |
32602168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 29998 - 30082
Alignment:
| Q |
58 |
tctcttatagtcacatcaatatttataaattgtctatttttatattggttgt-ttatagttgttgaattttagatgttcaaataa |
141 |
Q |
| |
|
||||||||||||||||||||| |||||| | | |||||||||| | ||||| | ||||||||| ||||||||||||| |||| |
|
|
| T |
29998 |
tctcttatagtcacatcaatagttataattgatgtatttttatactagttgtccaaaagttgttgatttttagatgttcatataa |
30082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 28762229 - 28762313
Alignment:
| Q |
58 |
tctcttatagtcacatcaatatttataaattgtctatttttatattggttgtt-tatagttgttgaattttagatgttcaaataa |
141 |
Q |
| |
|
||||||||| ||||||||||| |||||| | | |||||||||| | |||||| | ||||||||| ||||||||||||| |||| |
|
|
| T |
28762229 |
tctcttataatcacatcaatagttataattgatgtatttttatactagttgttcaaaagttgttgatttttagatgttcatataa |
28762313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University