View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9564_high_13 (Length: 244)
Name: NF9564_high_13
Description: NF9564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9564_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4002779 - 4002553
Alignment:
| Q |
1 |
ttttggtaatgtgaatttgaaggttaaacctgtgataacgaataatgtggcacctaggtttggttttggttttggatcgaagaggaaaacttgtgaacgt |
100 |
Q |
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| T |
4002779 |
ttttggtaatgtgaatttgaaggttaagcctgtgataacgaataatgtggcacctaggtttggttttggttttggatcgaagaggaaaacttgtgaacgt |
4002680 |
T |
|
| Q |
101 |
gtgagtttggggaagatttcaagttttgttgttagattgttttggagagaagccaaaaggattcaatcgtttcctgttctttctcttgctgctgcattgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4002679 |
gtgagtttggggaagatttcaagttttgttgttagattgttttggagagaagccaaaaggattcaatcgtttcctgttctttctcttgctgctgcattgg |
4002580 |
T |
|
| Q |
201 |
tgccgccaattcaaaatttgtatgtat |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
4002579 |
tgccgccaattcaaaatttgtatgtat |
4002553 |
T |
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