View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9564_high_4 (Length: 518)
Name: NF9564_high_4
Description: NF9564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9564_high_4 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 11 - 504
Target Start/End: Original strand, 69096 - 69589
Alignment:
| Q |
11 |
cagagattacccataacttgtttcactataaacaaaatttgcatcaccaaccaaatagtaagagttatttttgtcaggagtgcccattcaagaaaattaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
69096 |
cagagattacccataacttgtttcactataaacaaaatttgtatcaccaaccaaatagtaagaattatttttgtcaggagtgcccattcaagaaaattaa |
69195 |
T |
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| Q |
111 |
ttaattatattattcttactccaaatcatactnnnnnnnngactaagtgtgtgtttggtggcaagagacgtacgtcggtaagtttatcgaataaaaataa |
210 |
Q |
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| T |
69196 |
ttaattatattattcttactccaaatcatactaaaaaaaagactaagtgtgtgtttggtggcaagagacgcacgtcggtaagttcatcgaataaaaataa |
69295 |
T |
|
| Q |
211 |
ctgtgatttcaagaagctacaaaatgaaacttttaccttcatgcggaagtctttccatagttttatgaaaacgcagaattatcgttgaagaaccaaccaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||| |
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| T |
69296 |
ctgtgatttcaagaagctacaaaatgaaacttttaccttcatgcggaagtctttccgtagttttgtgaaaatgcagaaatatcgttgaagaaccaaccaa |
69395 |
T |
|
| Q |
311 |
aggctaaatattagccaaattaacgatattactttatacatttcaatatgacaaacacaccaatgtaataaaaatgcatgtaacactacgcacatgtaca |
410 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
69396 |
aggctaaatattagccaaattaacgatattattttatacatttcaatatgacaaacacaccaatgtaataaaaatgcatgtaacactacacacgtgtaca |
69495 |
T |
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| Q |
411 |
ttgaatacaaaaacttttataaaaatttatcttttaaagtccttaaagaatgttatgcggaaacttgttagcatttctcttttaaattagtctc |
504 |
Q |
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| T |
69496 |
ttgaatacaaaaacttttataaaaattcatcttttaaagtccttaaagaatgttatgcggaaacttgttagcatttcccttttaaattagtctc |
69589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 11 - 504
Target Start/End: Complemental strand, 40897188 - 40896695
Alignment:
| Q |
11 |
cagagattacccataacttgtttcactataaacaaaatttgcatcaccaaccaaatagtaagagttatttttgtcaggagtgcccattcaagaaaattaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40897188 |
cagagattacccataacttgtttcactataaacaaaatttgtatcaccaaccaaatagtaagaattatttttgtcaggagtgcccattcaagaaaattaa |
40897089 |
T |
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| Q |
111 |
ttaattatattattcttactccaaatcatactnnnnnnnngactaagtgtgtgtttggtggcaagagacgtacgtcggtaagtttatcgaataaaaataa |
210 |
Q |
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| T |
40897088 |
ttaattatattattcttactccaaatcatactaaaaaaaagactaagtgtgtgtttggtggcaagagacgcacgtcggtaagttcatcgaataaaaataa |
40896989 |
T |
|
| Q |
211 |
ctgtgatttcaagaagctacaaaatgaaacttttaccttcatgcggaagtctttccatagttttatgaaaacgcagaattatcgttgaagaaccaaccaa |
310 |
Q |
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| T |
40896988 |
ctgtgatttcaagaagctacaaaatgaaacttttaccttcatgcggaagtctttccgtagttttgtgaaaatgcagaaatatcgttgaagaaccaaccaa |
40896889 |
T |
|
| Q |
311 |
aggctaaatattagccaaattaacgatattactttatacatttcaatatgacaaacacaccaatgtaataaaaatgcatgtaacactacgcacatgtaca |
410 |
Q |
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| T |
40896888 |
aggctaaatattagccaaattaacgatattattttatacatttcaatatgacaaacacaccaatgtaataaaaatgcatgtaacactacacacgtgtaca |
40896789 |
T |
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| Q |
411 |
ttgaatacaaaaacttttataaaaatttatcttttaaagtccttaaagaatgttatgcggaaacttgttagcatttctcttttaaattagtctc |
504 |
Q |
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| T |
40896788 |
ttgaatacaaaaacttttataaaaattcatcttttaaagtccttaaagaatgttatgcggaaacttgttagcatttcccttttaaattagtctc |
40896695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 456
Target Start/End: Complemental strand, 24610876 - 24610836
Alignment:
| Q |
416 |
tacaaaaacttttataaaaatttatcttttaaagtccttaa |
456 |
Q |
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|||| ||||||||||||||| ||||| |||||||||||||| |
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| T |
24610876 |
tacacaaacttttataaaaaattatcatttaaagtccttaa |
24610836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 457
Target Start/End: Original strand, 15543730 - 15543780
Alignment:
| Q |
407 |
tacattgaatacaaaaacttttataaaaatttatcttttaaagtccttaaa |
457 |
Q |
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| T |
15543730 |
tacattgagtacaaaaaatttcataaaaatttatcttttaaaatctttaaa |
15543780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 456
Target Start/End: Original strand, 38172713 - 38172753
Alignment:
| Q |
416 |
tacaaaaacttttataaaaatttatcttttaaagtccttaa |
456 |
Q |
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|||| ||||||||||||||| ||||| |||||||||||||| |
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| T |
38172713 |
tacacaaacttttataaaaagttatcatttaaagtccttaa |
38172753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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