View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9564_high_5 (Length: 492)

Name: NF9564_high_5
Description: NF9564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9564_high_5
NF9564_high_5
[»] chr6 (6 HSPs)
chr6 (1-205)||(31888934-31889138)
chr6 (264-466)||(31888672-31888875)
chr6 (357-466)||(7501213-7501322)
chr6 (362-460)||(367166-367265)
chr6 (357-461)||(7534315-7534420)
chr6 (408-460)||(369061-369114)
[»] chr4 (4 HSPs)
chr4 (358-466)||(28571342-28571450)
chr4 (357-460)||(53011345-53011449)
chr4 (357-460)||(53008451-53008555)
chr4 (357-399)||(56563270-56563312)
[»] chr8 (2 HSPs)
chr8 (357-466)||(11096305-11096414)
chr8 (357-474)||(14685468-14685585)
[»] chr3 (5 HSPs)
chr3 (365-466)||(47743999-47744100)
chr3 (357-474)||(55418558-55418675)
chr3 (365-459)||(32813758-32813852)
chr3 (376-461)||(531393-531478)
chr3 (357-434)||(27237800-27237877)
[»] chr2 (12 HSPs)
chr2 (357-466)||(13273463-13273572)
chr2 (357-459)||(45485632-45485734)
chr2 (357-459)||(45496897-45496999)
chr2 (357-459)||(45504639-45504741)
chr2 (362-459)||(43081483-43081580)
chr2 (357-466)||(21794334-21794443)
chr2 (357-460)||(5989572-5989676)
chr2 (357-460)||(1645193-1645297)
chr2 (364-460)||(5983615-5983712)
chr2 (357-433)||(4285246-4285322)
chr2 (408-459)||(18164119-18164170)
chr2 (379-421)||(31468930-31468972)
[»] chr5 (7 HSPs)
chr5 (357-459)||(9503836-9503938)
chr5 (357-459)||(9507818-9507920)
chr5 (357-466)||(34854238-34854347)
chr5 (357-459)||(32090391-32090493)
chr5 (357-461)||(3627672-3627778)
chr5 (357-458)||(43095251-43095353)
chr5 (357-456)||(2357515-2357615)
[»] chr7 (3 HSPs)
chr7 (379-460)||(35323887-35323969)
chr7 (357-458)||(22582181-22582283)
chr7 (357-435)||(35703416-35703494)
[»] chr1 (2 HSPs)
chr1 (364-460)||(10917066-10917163)
chr1 (357-406)||(3709512-3709561)
[»] scaffold0014 (1 HSPs)
scaffold0014 (379-421)||(34602-34644)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 31889138 - 31888934
Alignment:
Q  1 gagaatttcagggatagtgaatgtttgaggtaacatgtttgcttgaaagagtgtgtagagaaaaggttttggaaagttgtgttaatgttgatgcaaaatt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31889138 gagaatttcagggagagtgaatgtttgaggtaacatgtttgcttgaaagagtgtgtagagaaaaggttttggaaagttgtgttaatgttgatgcaaaatt 31889039  T
Q  101 ggagactctgtttggtatttatatagaaatatatgtcctttttaattaattatttaaggtctatgattgggctaaagctaagtgtcggaactcaaaattg 200  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31889038 ggagactgagtttggtatttatatagaaatatatgtcctttttaattaattatttaaggtctatgattgggctaaagctaagcgtcggaactcaaaattg 31888939  T
Q  201 tcacg 205  Q
    |||||    
T  31888938 tcacg 31888934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 264 - 466
Target Start/End: Complemental strand, 31888875 - 31888672
Alignment:
Q  264 gtacaaatttgataaagtaatttaatcagactctaacattcgtcacggtttgactttaaatattttcttaaacaatacttttccccaa-cataggatgaa 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  31888875 gtacaaatttgataaagtaatttaatcagactctaacattcgtcacggtttggctttaaatattttcttaaacaatacttttccccaaccatatgatgaa 31888776  T
Q  363 acaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatggttttgagagagaaaat 462  Q
    | ||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| ||| ||| ||  ||||||||||||||||| ||||||     
T  31888775 aaaatgtatgaaattggaatgaaaccaacacttaaaactgggttcaattgaagaagatggaactgaaattttgggtttctatggttttgagaaagaaaag 31888676  T
Q  463 agat 466  Q
    ||||    
T  31888675 agat 31888672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 357 - 466
Target Start/End: Original strand, 7501213 - 7501322
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatggttttgagaga 456  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  7501213 gatggaacaatgtatgaaattagaatgaaaccaacacctaaaactgtgttcaattgaagaagatggaattgagattctgggtttctatggttttgagaga 7501312  T
Q  457 gaaaatagat 466  Q
    ||||| ||||    
T  7501313 gaaaagagat 7501322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 362 - 460
Target Start/End: Original strand, 367166 - 367265
Alignment:
Q  362 aacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctga-atttctatggttttgagagagaaa 460  Q
    |||||||||||||| | |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |  ||| |||||||||||||||||||    
T  367166 aacaatgtatgaaaattgaatgaaaccaacatttaaaactgtgttcaattgaagaagatggaattgagattctaaggtttatatggttttgagagagaaa 367265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 357 - 461
Target Start/End: Complemental strand, 7534420 - 7534315
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattct-gaatttctatggttttgagag 455  Q
    |||| |||||||||||||| | |||||||||||||||||||| |||| || ||||||| ||||||||||||||||||| |  ||||||| ||||||||||    
T  7534420 gatggaacaatgtatgaaaattgaatgaaaccaacacttaaatctgtattcaattgaaaaagatggaattgagattctagggtttctatagttttgagag 7534321  T
Q  456 agaaaa 461  Q
    ||||||    
T  7534320 agaaaa 7534315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 369061 - 369114
Alignment:
Q  408 aattgaagaagatggaattgagattct-gaatttctatggttttgagagagaaa 460  Q
    ||||||||||||||||||||||||||| |  |||||||| ||||||||||||||    
T  369061 aattgaagaagatggaattgagattctagggtttctatgattttgagagagaaa 369114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 358 - 466
Target Start/End: Original strand, 28571342 - 28571450
Alignment:
Q  358 atgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatggttttgagagag 457  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  28571342 atgaaacaatgtatgaaattagaatgaaaccaacacttaaaactatgttcaattgaagaagatggaattgagattttgaatttctatgattttgagagag 28571441  T
Q  458 aaaatagat 466  Q
    |||| ||||    
T  28571442 aaaagagat 28571450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 357 - 460
Target Start/End: Complemental strand, 53011449 - 53011345
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattct-gaatttctatggttttgagag 455  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| |  ||||||||||||||||||    
T  53011449 gatggaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgttcaattgaagaagatgaaatagagattctagggtttctatggttttgagag 53011350  T
Q  456 agaaa 460  Q
    |||||    
T  53011349 agaaa 53011345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 357 - 460
Target Start/End: Complemental strand, 53008555 - 53008451
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattct-gaatttctatggttttgagag 455  Q
    |||| ||||||| |||||||||||||||||||||||||||||| ||||||  |||||||||||||||||  ||||| | |  ||||||||||||||||||    
T  53008555 gatggaacaatgcatgaaattagaatgaaaccaacacttaaaattgtgttccattgaagaagatggaataaagattttagggtttctatggttttgagag 53008456  T
Q  456 agaaa 460  Q
    |||||    
T  53008455 agaaa 53008451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 56563312 - 56563270
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaa 399  Q
    |||| |||||||||||||||||||||||||||| |||||||||    
T  56563312 gatggaacaatgtatgaaattagaatgaaaccagcacttaaaa 56563270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 357 - 466
Target Start/End: Complemental strand, 11096414 - 11096305
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatggttttgagaga 456  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||  |||||||||||||||||||    
T  11096414 gatggaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgttcaattgaagaagatggaattgagatgatgggtttctatggttttgagaga 11096315  T
Q  457 gaaaatagat 466  Q
     |||||||||    
T  11096314 aaaaatagat 11096305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 357 - 474
Target Start/End: Complemental strand, 14685585 - 14685468
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattct-gaatttctatggttttgagag 455  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |  ||||||||||||| ||||    
T  14685585 gatgaaacaatgtatgaaaattgaatgaaaccaacacttaaaactgtgttcaattgaagaagatggaattgagattctagggtttctatggttttaagag 14685486  T
Q  456 agaaaatagatgagtaaaa 474  Q
    | || | ||||||||||||    
T  14685485 a-aagagagatgagtaaaa 14685468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 365 - 466
Target Start/End: Complemental strand, 47744100 - 47743999
Alignment:
Q  365 aatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatggttttgagagagaaaatag 464  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || ||||||||||||||||||||||||| ||    
T  47744100 aatgtatgaaattagaatgaaaccaacacttaaaactgtgttcaattaaagaagatggaattgagattatggatttctatggttttgagagagaaaagag 47744001  T
Q  465 at 466  Q
    ||    
T  47744000 at 47743999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 357 - 474
Target Start/End: Complemental strand, 55418675 - 55418558
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatggttttgagaga 456  Q
    |||| |||||||||||||||||||||||||||   |||||||| |||||| ||||||||||||||||||||||||||||  ||| |||||||||||||||    
T  55418675 gatggaacaatgtatgaaattagaatgaaaccggtacttaaaattgtgttcaattgaagaagatggaattgagattctgggtttatatggttttgagaga 55418576  T
Q  457 gaaaatagatgagtaaaa 474  Q
    ||||| ||||||||||||    
T  55418575 gaaaagagatgagtaaaa 55418558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 365 - 459
Target Start/End: Complemental strand, 32813852 - 32813758
Alignment:
Q  365 aatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatggttttgagagagaa 459  Q
    ||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| |||||||||||||  ||||||||||||||||||||||    
T  32813852 aatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatgaaattgagattctgggtttctatggttttgagagagaa 32813758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 376 - 461
Target Start/End: Original strand, 531393 - 531478
Alignment:
Q  376 ttagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatggttttgagagagaaaa 461  Q
    |||||||||||||| ||||||||||| ||||  |||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  531393 ttagaatgaaaccagcacttaaaactttgttcgattgaagaagatggaattgagattctgggtttctatggttttgagagagaaaa 531478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 357 - 434
Target Start/End: Complemental strand, 27237877 - 27237800
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattct 434  Q
    |||| |||||||||| ||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27237877 gatgcaacaatgtataaaaattgaatgaaaccaacacttaaaactgtgttcaattgaagaagatggaattgagattct 27237800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 357 - 466
Target Start/End: Complemental strand, 13273572 - 13273463
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatggttttgagaga 456  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| |||||||| |||||||||||    
T  13273572 gatggaacaatgtatgaaattagaatgaaaccaacatttaaaactgtgttcaattgaagaagatgaaattgagattctggatttctatagttttgagaga 13273473  T
Q  457 gaaaatagat 466  Q
    ||||| ||||    
T  13273472 gaaaagagat 13273463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 357 - 459
Target Start/End: Original strand, 45485632 - 45485734
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatggttttgagaga 456  Q
    |||| |||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  45485632 gatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggagttgagattctggatttctatgattttgagaga 45485731  T
Q  457 gaa 459  Q
    |||    
T  45485732 gaa 45485734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 357 - 459
Target Start/End: Original strand, 45496897 - 45496999
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatggttttgagaga 456  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| |||||||||||  |||||||||||||||||||    
T  45496897 gatggaacaatgtatgaaattagaatgaaaacaacacttaaaactgagttcaattgaagaagatggagttgagattctgggtttctatggttttgagaga 45496996  T
Q  457 gaa 459  Q
    |||    
T  45496997 gaa 45496999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 357 - 459
Target Start/End: Original strand, 45504639 - 45504741
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatggttttgagaga 456  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| |||||||||||  |||||||||||||||||||    
T  45504639 gatggaacaatgtatgaaattagaatgaaaacaacacttaaaactgagttcaattgaagaagatggagttgagattctgggtttctatggttttgagaga 45504738  T
Q  457 gaa 459  Q
    |||    
T  45504739 gaa 45504741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 362 - 459
Target Start/End: Original strand, 43081483 - 43081580
Alignment:
Q  362 aacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatggttttgagagagaa 459  Q
    ||||||||||||||||| |||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  43081483 aacaatgtatgaaattaaaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattctgggtttctatggttttgagagagaa 43081580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 357 - 466
Target Start/End: Original strand, 21794334 - 21794443
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatggttttgagaga 456  Q
    |||| |||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||| ||  |||||||| ||||||||||    
T  21794334 gatggaacaatgtatgaaattagaatgaaactagcacttaaaactgtgttcaattgaagaagatggaattgagattatgggtttctatgattttgagaga 21794433  T
Q  457 gaaaatagat 466  Q
     |||| ||||    
T  21794434 aaaaagagat 21794443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 357 - 460
Target Start/End: Complemental strand, 5989676 - 5989572
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattct-gaatttctatggttttgagag 455  Q
    |||| |||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |  ||||||||||||||||||    
T  5989676 gatggaacaatgtatgaaaattgaaggaaaccaacacttaaaactgtgttcaattgaagaagatggaattgagattctagggtttctatggttttgagag 5989577  T
Q  456 agaaa 460  Q
    |||||    
T  5989576 agaaa 5989572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 357 - 460
Target Start/End: Complemental strand, 1645297 - 1645193
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattct-gaatttctatggttttgagag 455  Q
    |||| |||||||||||||| | |||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |  ||||||||||||||||||    
T  1645297 gatggaacaatgtatgaaaattgaatgaaaccaacacttaaaactgtgttcaatagaagaagatggaattgagattatagggtttctatggttttgagag 1645198  T
Q  456 agaaa 460  Q
    |||||    
T  1645197 agaaa 1645193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 364 - 460
Target Start/End: Complemental strand, 5983712 - 5983615
Alignment:
Q  364 caatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattct-gaatttctatggttttgagagagaaa 460  Q
    |||||||||||| | ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | |  ||||||| |||||||||||||||    
T  5983712 caatgtatgaaaattgaatgaaaccaacacttaaaattgtgttcaattgaagaagatggaattgagattatagggtttctatagttttgagagagaaa 5983615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 357 - 433
Target Start/End: Complemental strand, 4285322 - 4285246
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattc 433  Q
    |||| |||||||||||||| | |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  4285322 gatggaacaatgtatgaaaattgaatgaaaccaacatttaaaactgtgttcaattgaagaagatggaattgagattc 4285246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 408 - 459
Target Start/End: Complemental strand, 18164170 - 18164119
Alignment:
Q  408 aattgaagaagatggaattgagattctgaatttctatggttttgagagagaa 459  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  18164170 aattgaagaagatggaattgagattctgggtttctatggttttgagagagaa 18164119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 421
Target Start/End: Original strand, 31468930 - 31468972
Alignment:
Q  379 gaatgaaaccaacacttaaaactgtgtttaattgaagaagatg 421  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  31468930 gaatgaaaccaacacttaaaactgtgttcaattgaagaagatg 31468972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 357 - 459
Target Start/End: Complemental strand, 9503938 - 9503836
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatggttttgagaga 456  Q
    |||| |||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  9503938 gatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattctgggtttctatggttttgagaga 9503839  T
Q  457 gaa 459  Q
    |||    
T  9503838 gaa 9503836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 357 - 459
Target Start/End: Complemental strand, 9507920 - 9507818
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatggttttgagaga 456  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||  ||| |||||||||||||||    
T  9507920 gatgtaacaatgtatgaaattagaatgaaaccaacacttaaaactgagttcaattgaagaagatggaattgagattctgggtttttatggttttgagaga 9507821  T
Q  457 gaa 459  Q
    |||    
T  9507820 gaa 9507818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 357 - 466
Target Start/End: Complemental strand, 34854347 - 34854238
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatggttttgagaga 456  Q
    |||| |||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||  ||||||||||||| |||||    
T  34854347 gatggaacaatgtatgaaattagaatgaaaccagcacttaaaactatgttcaattgaagaagatggaattgagattctgggtttctatggtttttagaga 34854248  T
Q  457 gaaaatagat 466  Q
    ||||| ||||    
T  34854247 gaaaagagat 34854238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 357 - 459
Target Start/End: Complemental strand, 32090493 - 32090391
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatggttttgagaga 456  Q
    |||| ||||||| |||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  32090493 gatggaacaatgaatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattctgggtttctatggttttgagaga 32090394  T
Q  457 gaa 459  Q
    |||    
T  32090393 gaa 32090391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 357 - 461
Target Start/End: Complemental strand, 3627778 - 3627672
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctgaatttctatgg--ttttgaga 454  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||| ||  |||||||||  ||||||||    
T  3627778 gatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgtgttcaattgaagaagatgaaattgagattatgggtttctatggttttttgaga 3627679  T
Q  455 gagaaaa 461  Q
    |||||||    
T  3627678 gagaaaa 3627672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 357 - 458
Target Start/End: Complemental strand, 43095353 - 43095251
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattct-gaatttctatggttttgagag 455  Q
    |||| |||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |  ||||||| | ||||||||    
T  43095353 gatggaacaatgtatgaaaattgaatgaaaccaacacttaaaactgtgttcaattgaagaagattgaattgagattctagggtttctattggtttgagag 43095254  T
Q  456 aga 458  Q
    |||    
T  43095253 aga 43095251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 357 - 456
Target Start/End: Original strand, 2357515 - 2357615
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattct-gaatttctatggttttgagag 455  Q
    |||| |||||||||||||| | ||||||||| |||||||||||||||||| ||||||||||||||| ||| | ||||| |  |||||||| |||||||||    
T  2357515 gatggaacaatgtatgaaaattgaatgaaactaacacttaaaactgtgttcaattgaagaagatgggattaaaattctagggtttctatgattttgagag 2357614  T
Q  456 a 456  Q
    |    
T  2357615 a 2357615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 379 - 460
Target Start/End: Original strand, 35323887 - 35323969
Alignment:
Q  379 gaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattct-gaatttctatggttttgagagagaaa 460  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  35323887 gaatgaaaccaacacttaaaactgtgttcaattgaagaagatggaattgagattctagggtttctatggttttgagagagaaa 35323969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 357 - 458
Target Start/End: Original strand, 22582181 - 22582283
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattct-gaatttctatggttttgagag 455  Q
    |||| |||||||||||||||||||||||||||| || |||||| || ||| |||||||||||||| |||||||||||| |  ||||||||||||||||||    
T  22582181 gatggaacaatgtatgaaattagaatgaaaccagcatttaaaattgagttcaattgaagaagatgaaattgagattctagggtttctatggttttgagag 22582280  T
Q  456 aga 458  Q
    |||    
T  22582281 aga 22582283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 35703494 - 35703416
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattctg 435  Q
    |||| |||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||    
T  35703494 gatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatagaattgagattctg 35703416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 364 - 460
Target Start/End: Complemental strand, 10917163 - 10917066
Alignment:
Q  364 caatgtatgaaattagaatgaaaccaacacttaaaactgtgtttaattgaagaagatggaattgagattct-gaatttctatggttttgagagagaaa 460  Q
    |||||||||||| | ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |  ||||||| |||||||||||||||    
T  10917163 caatgtatgaaaattgaatgaaaccaacacttaaaattgtgttcaattgaagaagatggaattgagattctagggtttctatagttttgagagagaaa 10917066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 406
Target Start/End: Original strand, 3709512 - 3709561
Alignment:
Q  357 gatgaaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgtt 406  Q
    |||| |||||||||||||| | |||||||||||||| |||||||||||||    
T  3709512 gatggaacaatgtatgaaaattgaatgaaaccaacatttaaaactgtgtt 3709561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 421
Target Start/End: Complemental strand, 34644 - 34602
Alignment:
Q  379 gaatgaaaccaacacttaaaactgtgtttaattgaagaagatg 421  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  34644 gaatgaaaccaacacttaaaactgtgttcaattgaagaagatg 34602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University