View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9564_low_1 (Length: 631)
Name: NF9564_low_1
Description: NF9564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9564_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 8884741 - 8885108
Alignment:
| Q |
19 |
agtaataagctcaacaatctcagctctagtttcactcgtcgctttcaatccacgatcagtcccataaaacgaaccaaccaacgccttcttcagcttctcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8884741 |
agtaataagctcaacaatctcagctctagtttcactcgtcgctttcaatccacgatcagtcccataaaacgaaccaaccaacgccttcttcagcttctcc |
8884840 |
T |
|
| Q |
119 |
gtctcaccatccgacactttctcagttgcttgcacctccgcaaccgcgacaccagcagaaggctctggaccccactcatcatcgattgtattagcccgaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
8884841 |
gtctcaccatccgacactttctcagttgcttgcacctccgcaaccgcgacaccagcagaaggctctggaccccactcatcatcgattctattagcctgaa |
8884940 |
T |
|
| Q |
219 |
catacaccacccgcctcaaaccatctgccaacacaatcggttttctgacatgtttgttcagaaaaccgactgtaatggtcgacggagaaattgaaggtgt |
318 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8884941 |
catacaccacccgcctcaaaccatcggccaacacaatcggttttctgacatgtttgttcagaaaaccgactgtgatggtcgacggagaaattgaaggtgt |
8885040 |
T |
|
| Q |
319 |
ggagttgagagaggttactggaagagtgtttgtatggagaagttggtctaggtttgatagagatgcca |
386 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
8885041 |
ggagttgagagaggttactggaagagtgtttgtatggagaagttggtttaggtttgatagagaggcca |
8885108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 465 - 625
Target Start/End: Original strand, 8885176 - 8885336
Alignment:
| Q |
465 |
acagggaagcggtgggtttagaagtctccagcaagacgctattacgaacgattgagattgattgtgtcctaagaaacaaaacggttgagatctcttttag |
564 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8885176 |
acagggaagcggtgggtttagaagtctccagcaagacgctattacgaacgattgagattgattgtgtcctaagaaacaaaacggttgagatctcttttag |
8885275 |
T |
|
| Q |
565 |
gaaattgagaggtgtacgaaaacgttggtgtgaaacgagattagtgtgtccttgagattga |
625 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8885276 |
gaaattgagaggtgtacgaaaacgttggtgtgaaacgagattagtgtgtccttgagattga |
8885336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 21 - 386
Target Start/End: Original strand, 8880641 - 8881003
Alignment:
| Q |
21 |
taataagctcaacaatctcagctctagtttcactcgtcgctttcaatccacgatcagtcccataaaacgaaccaaccaacgccttcttcagcttctccgt |
120 |
Q |
| |
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|||||||||||| |||||| ||||| || ||||||| |||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
8880641 |
taataagctcaaaaatctccgctcttgtctcactcgccgctttcaatccacgagcagtcccataaaaggaaccaaccaagtccttcttcagcttctccgt |
8880740 |
T |
|
| Q |
121 |
ctcaccatccgacactttctcagttgcttgcacctccgcaaccgcgacaccagcagaaggctctggaccccactcatcatcga---------ttgtatta |
211 |
Q |
| |
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| T |
8880741 |
ctcactttctggcactatc------------acctccgcaactgccacatcggcagaaggctctgaaccccactcatcatcatcatcatcatttgcagta |
8880828 |
T |
|
| Q |
212 |
gcccgaacatacaccacccgcctcaaaccatctgccaacacaatcggttttctgacatgtttgttcagaaaaccgactgtaatggtcgacggagaaattg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| || ||||| ||||||| ||| ||| || | ||||||| ||| |||||||| |||| ||||| |
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| T |
8880829 |
gcccgaacatacaccacccgcctcaaaccatcggccaccaaaatcgattttctggcatttttactctgtaaaccgaatgtgatggtcgatggagtaattg |
8880928 |
T |
|
| Q |
312 |
aaggtgtggagttgagagaggttactggaagagtgtttgtatggagaagttggtctaggtttgatagagatgcca |
386 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||| | ||||||||||||| |||||||| ||||| |||| |
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| T |
8880929 |
aaggtgtggagttgagagaggttactggaagtgtgtttatgtggagaagttggttgaggtttgagagagaggcca |
8881003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 21 - 386
Target Start/End: Original strand, 45073780 - 45074133
Alignment:
| Q |
21 |
taataagctcaacaatctcagctctagtttcactcgtcgctttcaatccacgatcagtcccataaaacgaaccaaccaacgccttcttcagcttctccgt |
120 |
Q |
| |
|
|||||||||||| |||||| ||||| || ||||||| |||||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
45073780 |
taataagctcaaaaatctccgctcttgtctcactcgcggctttcgatccatgatcagtcccataaaacaaaccaaccaagtccttcttcagcttctccgt |
45073879 |
T |
|
| Q |
121 |
ctcaccatccgacactttctcagttgcttgcacctccgcaaccgcgacaccagcagaaggctctggaccccactcatcatcgattgtattagcccgaaca |
220 |
Q |
| |
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| T |
45073880 |
ctcaatatctgtcactatc------------acctccgcaactgccacatcggcagaaggctctgaaccccactcatcatcattcgcattctcttgaaca |
45073967 |
T |
|
| Q |
221 |
tacaccacccgcctcaaaccatctgccaacacaatcggttttctgacatgtttgttcagaaaaccgactgtaatggtcgacggagaaattgaaggtgtgg |
320 |
Q |
| |
|
||| ||| |||||| |||||||| ||||||||||||||| ||||| |||||||| |||||||||||| ||| |||||| | ||||||||||||||||||| |
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| T |
45073968 |
tacgccatccgcctaaaaccatcggccaacacaatcggtcttctggcatgtttgctcagaaaaccgaatgtgatggtcaatggagaaattgaaggtgtgg |
45074067 |
T |
|
| Q |
321 |
agttgagagaggttactggaagagtgtttgtatggagaagttggtctaggtttgatagagatgcca |
386 |
Q |
| |
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|||||||||||||||||||||| |||||| | |||||||||| || |||||||||||||| |||| |
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| T |
45074068 |
agttgagagaggttactggaagtgtgtttatgtggagaagttagttgaggtttgatagagaggcca |
45074133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 267 - 386
Target Start/End: Original strand, 4341703 - 4341822
Alignment:
| Q |
267 |
catgtttgttcagaaaaccgactgtaatggtcgacggagaaattgaaggtgtggagttgagagaggttactggaagagtgtttgtatggagaagttggtc |
366 |
Q |
| |
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|||||||| |||||||| ||||| | ||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
4341703 |
catgtttgctcagaaaatcgactctgatggtcggtggagaaattgaagttgtggagttgagagaggttactggaagggtgtttgtgtggagaagttggtt |
4341802 |
T |
|
| Q |
367 |
taggtttgatagagatgcca |
386 |
Q |
| |
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|||||||| ||||| |||| |
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|
| T |
4341803 |
gaggtttgagagagaggcca |
4341822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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