View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9564_low_12 (Length: 396)
Name: NF9564_low_12
Description: NF9564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9564_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 38028495 - 38028867
Alignment:
| Q |
17 |
agtatcagggtcaaaatatattatggnnnnnnnnatatgtatctgactactgcaattgaggttgcatcaaccgtaattgacaccaatttttagcaatatc |
116 |
Q |
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| T |
38028495 |
agtatcagggtcaaaatatattatggttttttttatatgtatctgactactgcaattgaggttgcatcaaccgtaattgacgccaatttttagcaatatc |
38028594 |
T |
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| Q |
117 |
aaggatagaaacccttgaaaagttatataaaatgggaatggatatcaaagttgaggtaaatgttgaaatttgaaatattaggcacaagtgatagatagca |
216 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38028595 |
aagtatagaaacccttgaaaagttatataaaatgggaatggatatcaaagttgaggtaaatgttgaaatttgaaatattaggcacaagtgatagatagca |
38028694 |
T |
|
| Q |
217 |
cagaaactcacaagttgtctactttcatgacccaatatgttttgcatatgaacaaacagagatttccactgatgcataaggctcgattctaaatcggatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38028695 |
cagaaactcacaagttgtctactttcatgacccaatatgttttgcatatgaacaaacagagatttccactgatgcataaggctcgattctaaatcggatg |
38028794 |
T |
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| Q |
317 |
gatcaatgccgccttgttgttcatgtatgatattatgagtatcatttattccagaaaatttctggaccaccaa |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38028795 |
gatcaatgccgccttgttgttcatgtatgatattatgagtatcatttattccagaaaatttctggaccaccaa |
38028867 |
T |
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