View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9564_low_13 (Length: 386)

Name: NF9564_low_13
Description: NF9564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9564_low_13
NF9564_low_13
[»] chr4 (21 HSPs)
chr4 (4-122)||(3649438-3649556)
chr4 (265-359)||(3649153-3649247)
chr4 (127-186)||(3649339-3649398)
chr4 (5-50)||(21202613-21202658)
chr4 (4-53)||(21579896-21579945)
chr4 (13-49)||(9807031-9807067)
chr4 (13-47)||(46680666-46680700)
chr4 (13-49)||(2786839-2786875)
chr4 (14-49)||(7555133-7555168)
chr4 (4-50)||(49152266-49152312)
chr4 (13-51)||(52319198-52319236)
chr4 (12-49)||(23327806-23327843)
chr4 (13-46)||(37931798-37931831)
chr4 (4-49)||(50729692-50729737)
chr4 (13-49)||(2725293-2725329)
chr4 (13-49)||(23521754-23521790)
chr4 (13-49)||(24002212-24002248)
chr4 (13-49)||(29592775-29592811)
chr4 (13-49)||(29616059-29616095)
chr4 (13-49)||(37865627-37865663)
chr4 (15-47)||(53200826-53200858)
[»] chr8 (17 HSPs)
chr8 (4-49)||(34101379-34101424)
chr8 (13-50)||(31731934-31731971)
chr8 (5-49)||(8673245-8673289)
chr8 (5-49)||(31513773-31513817)
chr8 (13-49)||(41709648-41709684)
chr8 (13-49)||(45446326-45446362)
chr8 (13-51)||(4052366-4052404)
chr8 (5-47)||(17805563-17805605)
chr8 (13-47)||(30543205-30543239)
chr8 (13-47)||(45113929-45113963)
chr8 (13-50)||(17520467-17520504)
chr8 (4-49)||(25478119-25478164)
chr8 (13-46)||(35225537-35225570)
chr8 (13-49)||(14005227-14005263)
chr8 (13-49)||(32303783-32303819)
chr8 (13-49)||(37861767-37861803)
chr8 (13-49)||(40388912-40388948)
[»] chr5 (11 HSPs)
chr5 (4-49)||(18470607-18470652)
chr5 (13-49)||(24181798-24181834)
chr5 (13-49)||(32528586-32528622)
chr5 (4-48)||(37148753-37148797)
chr5 (4-49)||(41790642-41790687)
chr5 (13-49)||(548219-548255)
chr5 (13-49)||(8136710-8136746)
chr5 (13-49)||(20119642-20119678)
chr5 (13-49)||(21739345-21739381)
chr5 (13-49)||(31880250-31880286)
chr5 (13-49)||(35701148-35701184)
[»] chr1 (18 HSPs)
chr1 (4-49)||(6029549-6029594)
chr1 (4-49)||(46154780-46154825)
chr1 (13-49)||(7183798-7183834)
chr1 (13-49)||(16476412-16476448)
chr1 (13-49)||(34663822-34663858)
chr1 (13-49)||(39281775-39281811)
chr1 (5-48)||(1601049-1601092)
chr1 (5-48)||(51703412-51703455)
chr1 (5-47)||(3415104-3415146)
chr1 (13-47)||(12890120-12890154)
chr1 (13-47)||(16451009-16451043)
chr1 (5-47)||(32270240-32270282)
chr1 (13-50)||(1351692-1351729)
chr1 (13-50)||(26118458-26118495)
chr1 (13-49)||(844982-845018)
chr1 (13-49)||(30105923-30105959)
chr1 (13-49)||(41972792-41972828)
chr1 (13-49)||(42510405-42510441)
[»] chr3 (15 HSPs)
chr3 (5-49)||(1344876-1344920)
chr3 (13-50)||(20609810-20609847)
chr3 (13-49)||(5442163-5442199)
chr3 (4-48)||(22484910-22484954)
chr3 (13-49)||(34026554-34026590)
chr3 (5-49)||(43175441-43175485)
chr3 (15-49)||(51259959-51259993)
chr3 (4-49)||(54964049-54964094)
chr3 (13-49)||(3695449-3695485)
chr3 (5-49)||(4851625-4851669)
chr3 (13-49)||(20254947-20254983)
chr3 (13-49)||(21373812-21373848)
chr3 (13-49)||(24571154-24571190)
chr3 (13-49)||(28675662-28675698)
chr3 (13-49)||(53557972-53558008)
[»] chr2 (14 HSPs)
chr2 (4-47)||(18793435-18793478)
chr2 (13-47)||(38993250-38993284)
chr2 (13-49)||(32497786-32497822)
chr2 (13-49)||(33889129-33889165)
chr2 (19-49)||(12939480-12939510)
chr2 (5-47)||(19513864-19513906)
chr2 (13-51)||(35114654-35114692)
chr2 (13-47)||(39461187-39461221)
chr2 (13-49)||(5279017-5279053)
chr2 (13-49)||(16178063-16178099)
chr2 (13-49)||(18685707-18685743)
chr2 (13-49)||(30326514-30326550)
chr2 (13-49)||(33366481-33366517)
chr2 (13-49)||(44284508-44284544)
[»] chr7 (16 HSPs)
chr7 (5-46)||(21784749-21784790)
chr7 (4-49)||(43189418-43189463)
chr7 (13-49)||(10932741-10932777)
chr7 (13-49)||(16962987-16963023)
chr7 (13-49)||(23349474-23349510)
chr7 (13-49)||(36769753-36769789)
chr7 (13-49)||(40753045-40753081)
chr7 (13-48)||(34117349-34117384)
chr7 (12-46)||(17237005-17237039)
chr7 (13-47)||(26910590-26910624)
chr7 (13-51)||(37966848-37966886)
chr7 (13-47)||(47316867-47316901)
chr7 (13-49)||(3922887-3922923)
chr7 (13-49)||(30599192-30599228)
chr7 (5-45)||(41211377-41211417)
chr7 (13-49)||(46448812-46448848)
[»] chr6 (8 HSPs)
chr6 (17-49)||(11381964-11381996)
chr6 (13-49)||(28502330-28502366)
chr6 (13-49)||(29814736-29814772)
chr6 (5-49)||(34684199-34684243)
chr6 (15-49)||(10959872-10959906)
chr6 (4-49)||(2614767-2614812)
chr6 (13-49)||(15277159-15277195)
chr6 (13-49)||(32805349-32805385)
[»] scaffold0360 (1 HSPs)
scaffold0360 (13-49)||(15551-15587)
[»] scaffold0208 (1 HSPs)
scaffold0208 (13-49)||(2527-2563)
[»] scaffold0003 (1 HSPs)
scaffold0003 (13-49)||(338758-338794)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 3649556 - 3649438
Alignment:
Q  4 atactgtgttgtccagtacttactattttgcaaaccaaacacacccgagtaatgcacatgatattaatataaagggtagaattgaaattaaataattaat 103  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3649556 atactgtgttgtccagtacttactattttgcaaaccaaacgcacccgagtaatgcacatgatattaatataaagggtagaattgaaattaaataattaat 3649457  T
Q  104 gttactttaaatcacaaaa 122  Q
    |||||||||||||||||||    
T  3649456 gttactttaaatcacaaaa 3649438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 265 - 359
Target Start/End: Complemental strand, 3649247 - 3649153
Alignment:
Q  265 actaaagttgaattaccagcttctgttaaaaatactaaaacccaataacgctttgatgagatgatacgagtctcttttagtttaaccaaaatttt 359  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3649247 actaaagttgaattaccagcttctgttaaaaatactaaaactcaataacgctttgatgagatgacacgagtctcttttagtttaaccaaaatttt 3649153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 3649398 - 3649339
Alignment:
Q  127 gtgacatttaatattagataaatgttttagagatgacaaagatagttttctttttctttc 186  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3649398 gtgacatttaatattagataaatattttagagatgacaaagatagttttctttttctttc 3649339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 21202658 - 21202613
Alignment:
Q  5 tactgtgttgtccagtacttactattttgcaaaccaaacacacccg 50  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  21202658 tactgttttgtccagtacttactattttgcaaaccaaacacacccg 21202613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 21579945 - 21579896
Alignment:
Q  4 atactgtgttgtccagtacttactattttgcaaaccaaacacacccgagt 53  Q
    |||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  21579945 atactgttctgtccagtacttactgttttgcaaaccaaacacacccgagt 21579896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 9807067 - 9807031
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  9807067 tgtccagtacttactattttgcaaaccaaacacaccc 9807031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 46680666 - 46680700
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacac 47  Q
    |||||||||||||||||||||||||||||||||||    
T  46680666 tgtccagtacttactattttgcaaaccaaacacac 46680700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 2786875 - 2786839
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  2786875 tgtccagtacttactgttttgcaaaccaaacacaccc 2786839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 7555133 - 7555168
Alignment:
Q  14 gtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||| ||||||||||||||||||||||||||||||    
T  7555133 gtccaatacttactattttgcaaaccaaacacaccc 7555168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 49152266 - 49152312
Alignment:
Q  4 atactgtgttgtccagtacttactattttgcaaaccaaacacacccg 50  Q
    |||||||  |||||||||||| || ||||||||||||||||||||||    
T  49152266 atactgttctgtccagtacttgctgttttgcaaaccaaacacacccg 49152312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 52319236 - 52319198
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacacccga 51  Q
    |||||||||||| || |||||||||||||||||||||||    
T  52319236 tgtccagtacttgctgttttgcaaaccaaacacacccga 52319198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 23327843 - 23327806
Alignment:
Q  12 ttgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  23327843 ttgtccggtacttactgttttgcaaaccaaacacaccc 23327806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 37931831 - 37931798
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacaca 46  Q
    ||||||||||||||| ||||||||||||||||||    
T  37931831 tgtccagtacttactgttttgcaaaccaaacaca 37931798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 50729692 - 50729737
Alignment:
Q  4 atactgtgttgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||  |||||||| ||||||||||||||||||||| |||||    
T  50729692 atactgtgccgtccagtatttactattttgcaaaccaaacgcaccc 50729737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 2725293 - 2725329
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  2725293 tgtccagtacttgctgttttgcaaaccaaacacaccc 2725329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 23521790 - 23521754
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  23521790 tgtccagtacttgctgttttgcaaaccaaacacaccc 23521754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 24002248 - 24002212
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  24002248 tgtccagtacttgctgttttgcaaaccaaacacaccc 24002212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 29592811 - 29592775
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  29592811 tgtccagtatttactgttttgcaaaccaaacacaccc 29592775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 29616095 - 29616059
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  29616095 tgtcaagtacttgctattttgcaaaccaaacacaccc 29616059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 37865663 - 37865627
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  37865663 tgtcccgtacttactgttttgcaaaccaaacacaccc 37865627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 53200826 - 53200858
Alignment:
Q  15 tccagtacttactattttgcaaaccaaacacac 47  Q
    ||||||||||||| |||||||||||||||||||    
T  53200826 tccagtacttactcttttgcaaaccaaacacac 53200858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 34101424 - 34101379
Alignment:
Q  4 atactgtgttgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||    
T  34101424 atactgttttgtccagtacttacttttttgcaaaccaaacacaccc 34101379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 31731971 - 31731934
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacacccg 50  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  31731971 tgtccagtacttactgttttgcaaaccaaacacacccg 31731934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 8673245 - 8673289
Alignment:
Q  5 tactgtgttgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||| ||||||||||||| || |||||||||||||||||||||    
T  8673245 tactgttttgtccagtacttgctgttttgcaaaccaaacacaccc 8673289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 31513773 - 31513817
Alignment:
Q  5 tactgtgttgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||| ||||||| |||||||| |||||||||||||||||||||    
T  31513773 tactgttttgtccaatacttactgttttgcaaaccaaacacaccc 31513817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 41709684 - 41709648
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  41709684 tgtccagtacttactgttttgcaaaccaaacacaccc 41709648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 45446362 - 45446326
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  45446362 tgtccagtacttactgttttgcaaaccaaacacaccc 45446326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 4052404 - 4052366
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacacccga 51  Q
    |||||||||||| || |||||||||||||||||||||||    
T  4052404 tgtccagtacttgctgttttgcaaaccaaacacacccga 4052366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 17805605 - 17805563
Alignment:
Q  5 tactgtgttgtccagtacttactattttgcaaaccaaacacac 47  Q
    |||||| ||||| |||||||||| |||||||||||||||||||    
T  17805605 tactgttttgtcaagtacttactgttttgcaaaccaaacacac 17805563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 30543205 - 30543239
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacac 47  Q
    |||||| ||||||||||||||||||||||||||||    
T  30543205 tgtccaatacttactattttgcaaaccaaacacac 30543239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 45113963 - 45113929
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacac 47  Q
    ||||||||||||||| |||||||||||||||||||    
T  45113963 tgtccagtacttactgttttgcaaaccaaacacac 45113929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 17520504 - 17520467
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacacccg 50  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  17520504 tgtccagtacttactgttttgcaaaccaaccacacccg 17520467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 25478164 - 25478119
Alignment:
Q  4 atactgtgttgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||| ||||| |||||||||| |||| ||||||||||||||||    
T  25478164 atactgttttgtcaagtacttactgttttacaaaccaaacacaccc 25478119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 35225570 - 35225537
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacaca 46  Q
    ||||||||||||||| ||||||||||||||||||    
T  35225570 tgtccagtacttactgttttgcaaaccaaacaca 35225537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 14005227 - 14005263
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  14005227 tgtccagtacttgctgttttgcaaaccaaacacaccc 14005263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 32303783 - 32303819
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  32303783 tgtccagtacttgctgttttgcaaaccaaacacaccc 32303819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 37861803 - 37861767
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  37861803 tgtccagtacttactgttttgcaaatcaaacacaccc 37861767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 40388948 - 40388912
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||||| |||||||||||||||| |||||    
T  40388948 tgtccagtacttaccattttgcaaaccaaacgcaccc 40388912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 18470607 - 18470652
Alignment:
Q  4 atactgtgttgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||    
T  18470607 atactgtgctgtccagtacttactattttgcaaaccaaacgcaccc 18470652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 24181798 - 24181834
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  24181798 tgtccagtacttactgttttgcaaaccaaacacaccc 24181834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 32528622 - 32528586
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||||||||||||| |||||||||||    
T  32528622 tgtccagtacttactattttgcaaatcaaacacaccc 32528586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 37148753 - 37148797
Alignment:
Q  4 atactgtgttgtccagtacttactattttgcaaaccaaacacacc 48  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||||    
T  37148753 atactgttttgtccagtacttactgttttgcaaaccaaacgcacc 37148797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 41790642 - 41790687
Alignment:
Q  4 atactgtgttgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||  ||||||||||||||| ||||| |||||||||||||||    
T  41790642 atactgttctgtccagtacttactgttttgtaaaccaaacacaccc 41790687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 548255 - 548219
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||| | |||||||||||||||||||||    
T  548255 tgtccagtacttaatgttttgcaaaccaaacacaccc 548219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 8136746 - 8136710
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  8136746 tgtccagtacttactgttttacaaaccaaacacaccc 8136710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 20119678 - 20119642
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||| |||||||| |||||||||||||||||||||    
T  20119678 tgtccaatacttactgttttgcaaaccaaacacaccc 20119642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 21739345 - 21739381
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  21739345 tgtccagtacttgctgttttgcaaaccaaacacaccc 21739381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 31880250 - 31880286
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  31880250 tgtccagtacttactgttttgcaaatcaaacacaccc 31880286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 35701184 - 35701148
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  35701184 tgtccagtacttgctgttttgcaaaccaaacacaccc 35701148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 6029549 - 6029594
Alignment:
Q  4 atactgtgttgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||    
T  6029549 atactgtgctgtccagtacttactattttgcaaaccaaacgcaccc 6029594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 46154825 - 46154780
Alignment:
Q  4 atactgtgttgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||||    
T  46154825 atactgttttgtccagtacttactgttttgcaaactaaacacaccc 46154780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 7183834 - 7183798
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  7183834 tgtccagtacttactgttttgcaaaccaaacacaccc 7183798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 16476412 - 16476448
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  16476412 tgtccagtacttactgttttgcaaaccaaacacaccc 16476448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 34663858 - 34663822
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  34663858 tgtccagtacttactgttttgcaaaccaaacacaccc 34663822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 39281811 - 39281775
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  39281811 tgtccagtacttactgttttgcaaaccaaacacaccc 39281775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 1601092 - 1601049
Alignment:
Q  5 tactgtgttgtccagtacttactattttgcaaaccaaacacacc 48  Q
    |||||| |||||||||||||||| ||||||| ||||||||||||    
T  1601092 tactgttttgtccagtacttactgttttgcagaccaaacacacc 1601049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 51703412 - 51703455
Alignment:
Q  5 tactgtgttgtccagtacttactattttgcaaaccaaacacacc 48  Q
    |||||| ||||||||||||| || ||||||||||||||||||||    
T  51703412 tactgttttgtccagtacttgctgttttgcaaaccaaacacacc 51703455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 3415104 - 3415146
Alignment:
Q  5 tactgtgttgtccagtacttactattttgcaaaccaaacacac 47  Q
    |||||| |||||||||||||||| |||| ||||||||||||||    
T  3415104 tactgttttgtccagtacttactgttttacaaaccaaacacac 3415146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 12890154 - 12890120
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacac 47  Q
    |||| ||||||||||||||||||||||||||||||    
T  12890154 tgtctagtacttactattttgcaaaccaaacacac 12890120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 16451043 - 16451009
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacac 47  Q
    ||||||||||||||| |||||||||||||||||||    
T  16451043 tgtccagtacttactgttttgcaaaccaaacacac 16451009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 32270282 - 32270240
Alignment:
Q  5 tactgtgttgtccagtacttactattttgcaaaccaaacacac 47  Q
    |||||| ||||||||||||| || |||||||||||||||||||    
T  32270282 tactgttttgtccagtacttgctgttttgcaaaccaaacacac 32270240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 1351692 - 1351729
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacacccg 50  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  1351692 tgtcaagtacttactgttttgcaaaccaaacacacccg 1351729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 26118458 - 26118495
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacacccg 50  Q
    |||||||||||| || ||||||||||||||||||||||    
T  26118458 tgtccagtacttgctgttttgcaaaccaaacacacccg 26118495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 844982 - 845018
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  844982 tgtccagtacttgctgttttgcaaaccaaacacaccc 845018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 30105923 - 30105959
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  30105923 tgtccagtacttgctgttttgcaaaccaaacacaccc 30105959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 41972828 - 41972792
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  41972828 tgtccagtacttgctgttttgcaaaccaaacacaccc 41972792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 42510441 - 42510405
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  42510441 tgtccagtacttactgttttgcaaatcaaacacaccc 42510405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 1344876 - 1344920
Alignment:
Q  5 tactgtgttgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||    
T  1344876 tactgttttgtccagtacttgctattttgcaaaccaaacacaccc 1344920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 20609810 - 20609847
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacacccg 50  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  20609810 tgtccagtacttactgttttgcaaaccaaacacacccg 20609847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 5442199 - 5442163
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| ||||||||||||||||||||||||    
T  5442199 tgtccagtacttgctattttgcaaaccaaacacaccc 5442163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 22484910 - 22484954
Alignment:
Q  4 atactgtgttgtccagtacttactattttgcaaaccaaacacacc 48  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||    
T  22484910 atactgttatgtccagtacttactgttttgcaaaccaaacacacc 22484954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 34026590 - 34026554
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  34026590 tgtccagtacttactgttttgcaaaccaaacacaccc 34026554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 43175485 - 43175441
Alignment:
Q  5 tactgtgttgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||| ||||||||||||| || |||||||||||||||||||||    
T  43175485 tactgttttgtccagtacttgctgttttgcaaaccaaacacaccc 43175441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 51259959 - 51259993
Alignment:
Q  15 tccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||| |||||||||||||||||||||    
T  51259959 tccagtacttactgttttgcaaaccaaacacaccc 51259993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 54964049 - 54964094
Alignment:
Q  4 atactgtgttgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||  |||||||||| ||||||||||||||||||||| ||||    
T  54964049 atactgttatgtccagtacgtactattttgcaaaccaaacataccc 54964094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 3695449 - 3695485
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||  |||||||||||||||||||||    
T  3695449 tgtccagtacttacatttttgcaaaccaaacacaccc 3695485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 4851625 - 4851669
Alignment:
Q  5 tactgtgttgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||| |||||| |||||| || |||||||||||||||||||||    
T  4851625 tactgttttgtccggtacttgctgttttgcaaaccaaacacaccc 4851669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 20254983 - 20254947
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  20254983 tgtccagtacttgctgttttgcaaaccaaacacaccc 20254947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 21373848 - 21373812
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||| |||||||| |||||||||||||||||||||    
T  21373848 tgtccaatacttactgttttgcaaaccaaacacaccc 21373812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 24571190 - 24571154
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  24571190 tgtccagtacttactgttttacaaaccaaacacaccc 24571154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 28675698 - 28675662
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||| | |||||||||||||||||||||    
T  28675698 tgtccagtacttattgttttgcaaaccaaacacaccc 28675662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 53557972 - 53558008
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||| |||||||||| |||||||||||||||||||||    
T  53557972 tgtcaagtacttactgttttgcaaaccaaacacaccc 53558008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 18793435 - 18793478
Alignment:
Q  4 atactgtgttgtccagtacttactattttgcaaaccaaacacac 47  Q
    ||||||| |||||||||||||| |||||||||||||||||||||    
T  18793435 atactgttttgtccagtacttattattttgcaaaccaaacacac 18793478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 38993250 - 38993284
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacac 47  Q
    |||||||||||||||||||||||||||||||||||    
T  38993250 tgtccagtacttactattttgcaaaccaaacacac 38993284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 32497822 - 32497786
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  32497822 tgtccagtacttactgttttgcaaaccaaacacaccc 32497786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 33889165 - 33889129
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  33889165 tgtccagtacttactgttttgcaaaccaaacacaccc 33889129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 12939480 - 12939510
Alignment:
Q  19 gtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||||||||||||||||||||||    
T  12939480 gtacttactattttgcaaaccaaacacaccc 12939510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 19513864 - 19513906
Alignment:
Q  5 tactgtgttgtccagtacttactattttgcaaaccaaacacac 47  Q
    |||||| || ||||||||||||| |||||||||||||||||||    
T  19513864 tactgttttatccagtacttactgttttgcaaaccaaacacac 19513906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 35114692 - 35114654
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacacccga 51  Q
    |||||||||||| || |||||||||||||||||||||||    
T  35114692 tgtccagtacttgctgttttgcaaaccaaacacacccga 35114654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 39461221 - 39461187
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacac 47  Q
    ||||||||||||||| |||||||||||||||||||    
T  39461221 tgtccagtacttactgttttgcaaaccaaacacac 39461187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 5279017 - 5279053
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||| |||||||||| |||||||||||||||||||||    
T  5279017 tgtcaagtacttactgttttgcaaaccaaacacaccc 5279053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 16178063 - 16178099
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  16178063 tgtccagtacttactgttttgcaaaccaatcacaccc 16178099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 18685743 - 18685707
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  18685743 tgtccagtacttgctgttttgcaaaccaaacacaccc 18685707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 30326514 - 30326550
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  30326514 tgtccagtacttgctcttttgcaaaccaaacacaccc 30326550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 33366517 - 33366481
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  33366517 tgtccagtacttgctgttttgcaaaccaaacacaccc 33366481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 44284544 - 44284508
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  44284544 tgtccagtacttgctgttttgcaaaccaaacacaccc 44284508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 21784790 - 21784749
Alignment:
Q  5 tactgtgttgtccagtacttactattttgcaaaccaaacaca 46  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  21784790 tactgttttgtccagtacttactgttttgcaaaccaaacaca 21784749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 43189418 - 43189463
Alignment:
Q  4 atactgtgttgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||  ||||||||||||||| |||||||||||||||||||||    
T  43189418 atactgttatgtccagtacttactgttttgcaaaccaaacacaccc 43189463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 10932741 - 10932777
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  10932741 tgtccagtacttactgttttgcaaaccaaacacaccc 10932777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 16963023 - 16962987
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  16963023 tgtccagtacttactgttttgcaaaccaaacacaccc 16962987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 23349474 - 23349510
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||| ||||||||||||||||||||||||||||||    
T  23349474 tgtccattacttactattttgcaaaccaaacacaccc 23349510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 36769753 - 36769789
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  36769753 tgtccagtacttactgttttgcaaaccaaacacaccc 36769789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 40753081 - 40753045
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  40753081 tgtccagtacttactgttttgcaaaccaaacacaccc 40753045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 34117384 - 34117349
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacacc 48  Q
    ||||||||||||||| ||||||||||||||||||||    
T  34117384 tgtccagtacttactgttttgcaaaccaaacacacc 34117349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 17237039 - 17237005
Alignment:
Q  12 ttgtccagtacttactattttgcaaaccaaacaca 46  Q
    |||||||||||||||| ||||||||||||||||||    
T  17237039 ttgtccagtacttactgttttgcaaaccaaacaca 17237005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 26910590 - 26910624
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacac 47  Q
    ||||||||||||||| |||||||||||||||||||    
T  26910590 tgtccagtacttactgttttgcaaaccaaacacac 26910624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 37966886 - 37966848
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacacccga 51  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  37966886 tgtctagtacttactattttgcaaaccaaacaaacccga 37966848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 47316867 - 47316901
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacac 47  Q
    ||||||||||||||| |||||||||||||||||||    
T  47316867 tgtccagtacttactgttttgcaaaccaaacacac 47316901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 3922887 - 3922923
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  3922887 tgtccagtacttgctgttttgcaaaccaaacacaccc 3922923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 30599192 - 30599228
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  30599192 tgtccagtacttactgttttgtaaaccaaacacaccc 30599228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 41211377 - 41211417
Alignment:
Q  5 tactgtgttgtccagtacttactattttgcaaaccaaacac 45  Q
    |||||| ||||||||||||| || |||||||||||||||||    
T  41211377 tactgttttgtccagtacttgctgttttgcaaaccaaacac 41211417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 46448812 - 46448848
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||| |||||||||||||||||||||||||| |||||    
T  46448812 tgtcaagtacttactattttgcaaaccaaacgcaccc 46448848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 11381996 - 11381964
Alignment:
Q  17 cagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||||||||||||||||||||||||    
T  11381996 cagtacttactattttgcaaaccaaacacaccc 11381964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 28502366 - 28502330
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  28502366 tgtccagtacttactgttttgcaaaccaaacacaccc 28502330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 29814772 - 29814736
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  29814772 tgtccagtacttactgttttgcaaaccaaacacaccc 29814736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 34684199 - 34684243
Alignment:
Q  5 tactgtgttgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||| ||||||| |||||||| |||||||||||||||||||||    
T  34684199 tactgttttgtccaatacttactgttttgcaaaccaaacacaccc 34684243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 10959906 - 10959872
Alignment:
Q  15 tccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||| |||||||||||||||||||||    
T  10959906 tccagtacttactgttttgcaaaccaaacacaccc 10959872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 2614812 - 2614767
Alignment:
Q  4 atactgtgttgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||| |||||||||||||  | |||||||||||||||||||||    
T  2614812 atactgttttgtccagtacttgttgttttgcaaaccaaacacaccc 2614767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 15277159 - 15277195
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  15277159 tgtccagtacttgctgttttgcaaaccaaacacaccc 15277195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 32805385 - 32805349
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  32805385 tgtccagtacttgctgttttgcaaaccaaacacaccc 32805349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 15551 - 15587
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  15551 tgtccagtacttactgttttacaaaccaaacacaccc 15587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 2527 - 2563
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  2527 tgtccagtacttgctgttttgcaaaccaaacacaccc 2563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 338794 - 338758
Alignment:
Q  13 tgtccagtacttactattttgcaaaccaaacacaccc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  338794 tgtccagtacttgctgttttgcaaaccaaacacaccc 338758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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