View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9564_low_15 (Length: 384)
Name: NF9564_low_15
Description: NF9564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9564_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 22934650 - 22934886
Alignment:
| Q |
7 |
atggtgttgaaattagggttgatgtgttcaaatgatgttccaactattaggcctagcataagacaagtagtgaggattttggatggagaagttgagttac |
106 |
Q |
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| T |
22934650 |
atggtgttgaaattagggttgatgtgttcaaatgatgttcctactattaggcctagcataagacaagtagtgaggattttggatggagaagttgagttac |
22934749 |
T |
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| Q |
107 |
caaatgaaatgagaaagccaggaggtattgattcacaagaggggtttgatgaatttttgcactctcttggaacttcatcatttgataagacaaattcaag |
206 |
Q |
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| T |
22934750 |
caaatgaaatgagaaagccaagaggtattgattcacaagaggggtttgatgagtttttgcattctcttggaacttcttcatttgataagactaattcaag |
22934849 |
T |
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| Q |
207 |
ttcctatcttggaacttcttcatttgataacacatga |
243 |
Q |
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| T |
22934850 |
ctcctatcttggaacttcttcatttgataacacatga |
22934886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 22920941 - 22920766
Alignment:
| Q |
7 |
atggtgttgaaattagggttgatgtgttcaaatgatgttccaactattaggcctagcataagacaagtagtgaggattttggatggagaagttgagttac |
106 |
Q |
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| T |
22920941 |
atggttttgaaattaggtttgatatgttcaaatgatgttccaactataaggcctagtatgagacaagtagtgaggattttggatggagaagttgagttac |
22920842 |
T |
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| Q |
107 |
caaatgaaatgagaaagccaggaggtattgattcacaagaggggtttgatgaatttttgcactctcttggaacttc |
182 |
Q |
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| T |
22920841 |
caaatgaaatgagaaaaccaggtggtattgattcacaagaaggatttgatgaattcttgaattctcttggaacttc |
22920766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 365
Target Start/End: Original strand, 22934949 - 22935008
Alignment:
| Q |
306 |
gtgttaattaattttgtcagttattcttgacatgaaaacttatattatgggtgtgtatgt |
365 |
Q |
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| T |
22934949 |
gtgttaattaattttgtcagttattcttgacgtgaaaacttatattaggggtgtgtatgt |
22935008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 171
Target Start/End: Complemental strand, 15627013 - 15626852
Alignment:
| Q |
10 |
gtgttgaaattagggttgatgtgttcaaatgatgttccaactattaggcctagcataagacaagtagtgaggattttggatggagaagttgagttaccaa |
109 |
Q |
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| T |
15627013 |
gtgttgaaattaggattgttatgttcaaatgatgttccttttgttagacctagcatgagacaagtgatgaggattttggatggagaagttgagttgcctg |
15626914 |
T |
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| Q |
110 |
atgaaatgagaaagccaggaggtattgattcacaagaggggtttgatgaatttttgcactct |
171 |
Q |
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| T |
15626913 |
atgatttgagtaatccaggagttattgatccacaacaggggtttgatgaatttttgcactct |
15626852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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