View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9564_low_17 (Length: 379)

Name: NF9564_low_17
Description: NF9564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9564_low_17
NF9564_low_17
[»] chr8 (26 HSPs)
chr8 (18-367)||(27967640-27967988)
chr8 (18-367)||(27979760-27980108)
chr8 (18-367)||(28024626-28024974)
chr8 (18-367)||(28037062-28037410)
chr8 (18-367)||(27885727-27886075)
chr8 (218-367)||(27944583-27944733)
chr8 (104-214)||(27872590-27872700)
chr8 (264-367)||(27873127-27873236)
chr8 (18-69)||(27979715-27979766)
chr8 (18-69)||(28037017-28037068)
chr8 (21-69)||(27872213-27872261)
chr8 (21-69)||(27872498-27872546)
chr8 (18-61)||(27872255-27872298)
chr8 (18-61)||(27872345-27872388)
chr8 (18-69)||(27979625-27979676)
chr8 (18-69)||(27979670-27979721)
chr8 (18-69)||(28036972-28037023)
chr8 (173-218)||(27858499-27858544)
chr8 (21-69)||(27872303-27872351)
chr8 (18-61)||(27872450-27872493)
chr8 (22-69)||(27884406-27884453)
chr8 (22-69)||(27885686-27885733)
chr8 (22-69)||(27967599-27967646)
chr8 (22-69)||(28024585-28024632)
chr8 (22-69)||(28036931-28036978)
chr8 (18-51)||(27872408-27872441)


Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 27967640 - 27967988
Alignment:
18 tggtggtggtggacttcctgttgttggatctggtagaggactgcttggtggtctcgtgggaggactgcctgttgttggtggacttcttggtccaattctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27967640 tggtggtggtggacttcctgttgttggatctggtagaggactgcttggtggtctcgtgggaggactgcctgttgttggtggacttcttggtccaattctt 27967739  T
118 ggtggatagtgccgtgaaggtgcgcatattggaaataatgatggcattgtacctgatggtcatcactaagcttataatgatatcttcataaataatatct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
27967740 ggtggatagtgccgtgaaggtgcgcatattggaaataatgatggcattgtacctgatggtcatcactaa-cttataatgatatcttcataaataatatct 27967838  T
218 atatagttctcctccttataaccatatatattctgtagaatatatcaacaagaataagatatgcttataaactttaattaataatatatttacaatgttg 317  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
27967839 atatagttctcctcctaataaccatatatattctgtagaatatatcaacaagaataagatatgcctataaactttaattaataatatatttacaatgttg 27967938  T
318 agttcatgcaaattgatgcactatcatgaaaaactatattctgatgtcca 367  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
27967939 agttcatgcaaattgatgcactatcatgaaaaactatattcttatgtcca 27967988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 27979760 - 27980108
Alignment:
18 tggtggtggtggacttcctgttgttggatctggtagaggactgcttggtggtctcgtgggaggactgcctgttgttggtggacttcttggtccaattctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27979760 tggtggtggtggacttcctgttgttggatctggtagaggactgcttggtggtctcgtgggaggactgcctgttgttggtggacttcttggtccaattctt 27979859  T
118 ggtggatagtgccgtgaaggtgcgcatattggaaataatgatggcattgtacctgatggtcatcactaagcttataatgatatcttcataaataatatct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
27979860 ggtggatagtgccgtgaaggtgcgcatattggaaataatgatggcattgtacctgatggtcatcactaa-cttataatgatatcttcataaataatatct 27979958  T
218 atatagttctcctccttataaccatatatattctgtagaatatatcaacaagaataagatatgcttataaactttaattaataatatatttacaatgttg 317  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
27979959 atatagttctcctcctaataaccatatatattctgtagaatatatcaacaagaataagatatgcctataaactttaattaataatatatttacaatgttg 27980058  T
318 agttcatgcaaattgatgcactatcatgaaaaactatattctgatgtcca 367  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
27980059 agttcatgcaaattgatgcactatcatgaaaaactatattcttatgtcca 27980108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 28024626 - 28024974
Alignment:
18 tggtggtggtggacttcctgttgttggatctggtagaggactgcttggtggtctcgtgggaggactgcctgttgttggtggacttcttggtccaattctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28024626 tggtggtggtggacttcctgttgttggatctggtagaggactgcttggtggtctcgtgggaggactgcctgttgttggtggacttcttggtccaattctt 28024725  T
118 ggtggatagtgccgtgaaggtgcgcatattggaaataatgatggcattgtacctgatggtcatcactaagcttataatgatatcttcataaataatatct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
28024726 ggtggatagtgccgtgaaggtgcgcatattggaaataatgatggcattgtacctgatggtcatcactaa-cttataatgatatcttcataaataatatct 28024824  T
218 atatagttctcctccttataaccatatatattctgtagaatatatcaacaagaataagatatgcttataaactttaattaataatatatttacaatgttg 317  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
28024825 atatagttctcctcctaataaccatatatattctgtagaatatatcaacaagaataagatatgcctataaactttaattaataatatatttacaatgttg 28024924  T
318 agttcatgcaaattgatgcactatcatgaaaaactatattctgatgtcca 367  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
28024925 agttcatgcaaattgatgcactatcatgaaaaactatattcttatgtcca 28024974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 28037062 - 28037410
Alignment:
18 tggtggtggtggacttcctgttgttggatctggtagaggactgcttggtggtctcgtgggaggactgcctgttgttggtggacttcttggtccaattctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28037062 tggtggtggtggacttcctgttgttggatctggtagaggactgcttggtggtctcgtgggaggactgcctgttgttggtggacttcttggtccaattctt 28037161  T
118 ggtggatagtgccgtgaaggtgcgcatattggaaataatgatggcattgtacctgatggtcatcactaagcttataatgatatcttcataaataatatct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
28037162 ggtggatagtgccgtgaaggtgcgcatattggaaataatgatggcattgtacctgatggtcatcactaa-cttataatgatatcttcataaataatatct 28037260  T
218 atatagttctcctccttataaccatatatattctgtagaatatatcaacaagaataagatatgcttataaactttaattaataatatatttacaatgttg 317  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
28037261 atatagttctcctcctaataaccatatatattctgtagaatatatcaacaagaataagatatgcctataaactttaattaataatatatttacaatgttg 28037360  T
318 agttcatgcaaattgatgcactatcatgaaaaactatattctgatgtcca 367  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
28037361 agttcatgcaaattgatgcactatcatgaaaaactatattcttatgtcca 28037410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 27885727 - 27886075
Alignment:
18 tggtggtggtggacttcctgttgttggatctggtagaggactgcttggtggtctcgtgggaggactgcctgttgttggtggacttcttggtccaattctt 117  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||  |||||| || ||||||| ||||||||  |||||||||||||||||||    
27885727 tggtggtggtggacttcctggtgtaggatctggtagaggactgcttggtggcatcgtggaagcactgcctattgttggtccacttcttggtccaattctt 27885826  T
118 ggtggatagtgccgtgaaggtgcgcatattggaaataatgatggcattgtacctgatggtcatcactaagcttataatgatatcttcataaataatatct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
27885827 ggtggatagtgccgtgaaggtgcgcatattggaaataatgatggcattgtacctgatggtcatcactaa-cttataatgatatcttcataaataatatct 27885925  T
218 atatagttctcctccttataaccatatatattctgtagaatatatcaacaagaataagatatgcttataaactttaattaataatatatttacaatgttg 317  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27885926 atatagttctcctcctaataacaatatatattctgtagaatatatcaacaagaataagatatgcttataaactttaattaataatatatttacaatgttg 27886025  T
318 agttcatgcaaattgatgcactatcatgaaaaactatattctgatgtcca 367  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||    
27886026 agttcatgcgaattgatgcactatcatgaaaaactatattcttatgtcca 27886075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 218 - 367
Target Start/End: Original strand, 27944583 - 27944733
Alignment:
218 atatagttctcctccttataaccatatatattct-gtagaatatatcaacaagaataagatatgcttataaactttaattaataatatatttacaatgtt 316  Q
    |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27944583 atatagttctcctcctaataactatatatattctcgtagaatatatcaacaagaataagatatgcttataaactttaattaataatatatttacaatgtt 27944682  T
317 gagttcatgcaaattgatgcactatcatgaaaaactatattctgatgtcca 367  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||    
27944683 gagttcatgcgaattgatgcactatcatgaaaaactatattcttatgtcca 27944733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 104 - 214
Target Start/End: Original strand, 27872590 - 27872700
Alignment:
104 ttggtccaattcttggtggatagtgccgtgaaggtgcgcatattggaaataatgatggcattgtacctgatggtcatcactaagcttataatgatatctt 203  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| || ||||||||||| |||| ||||||||||||||    
27872590 ttggtccaattcttggtggatagtgccgtgaaggtgggcatattggaaataatgacggcgttgtatctcatggtcatcaccaagcctataatgatatctt 27872689  T
204 cataaataata 214  Q
    |||||||||||    
27872690 cataaataata 27872700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 264 - 367
Target Start/End: Original strand, 27873127 - 27873236
Alignment:
264 aacaagaataagatatgcttataaactttaattaataatatatttacaat------gttgagttcatgcaaattgatgcactatcatgaaaaactatatt 357  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||      ||| ||||||||||||||||||||||||||||||||||||| ||    
27873127 aacaagaataagatatgattataaactttaattaataatatatttacaattacaatgttaagttcatgcaaattgatgcactatcatgaaaaactatgtt 27873226  T
358 ctgatgtcca 367  Q
    || |||||||    
27873227 cttatgtcca 27873236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 27979715 - 27979766
Alignment:
18 tggtggtggtggacttcctgttgttggatctggtagaggactgcttggtggt 69  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
27979715 tggtggtggtggacttcctgttgtaggatctggtggaggactgcctggtggt 27979766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 28037017 - 28037068
Alignment:
18 tggtggtggtggacttcctgttgttggatctggtagaggactgcttggtggt 69  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
28037017 tggtggtggtggacttcctgttgtaggatctggtggaggactgcctggtggt 28037068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 27872213 - 27872261
Alignment:
21 tggtggtggacttcctgttgttggatctggtagaggactgcttggtggt 69  Q
    ||||||||||||||||||||| ||||||||| ||||||||| |||||||    
27872213 tggtggtggacttcctgttgtaggatctggtggaggactgcctggtggt 27872261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 27872498 - 27872546
Alignment:
21 tggtggtggacttcctgttgttggatctggtagaggactgcttggtggt 69  Q
    ||||||||||||||||||||| ||||||||| ||||||||| |||||||    
27872498 tggtggtggacttcctgttgtaggatctggtggaggactgcctggtggt 27872546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 27872255 - 27872298
Alignment:
18 tggtggtggtggacttcctgttgttggatctggtagaggactgc 61  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
27872255 tggtggtggtggacttcctgttgtaggatctggtggaggactgc 27872298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 27872345 - 27872388
Alignment:
18 tggtggtggtggacttcctgttgttggatctggtagaggactgc 61  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
27872345 tggtggtggtggacttcctgttgtaggatctggtggaggactgc 27872388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 27979625 - 27979676
Alignment:
18 tggtggtggtggacttcctgttgttggatctggtagaggactgcttggtggt 69  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| |||||||    
27979625 tggtggtggtggacttcctggtgtaggatctggtggaggactgcctggtggt 27979676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 27979670 - 27979721
Alignment:
18 tggtggtggtggacttcctgttgttggatctggtagaggactgcttggtggt 69  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| |||||||    
27979670 tggtggtggtggacttcctggtgtaggatctggtggaggactgcctggtggt 27979721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 28036972 - 28037023
Alignment:
18 tggtggtggtggacttcctgttgttggatctggtagaggactgcttggtggt 69  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| |||||||    
28036972 tggtggtggtggacttcctggtgtaggatctggtggaggactgcctggtggt 28037023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 27858499 - 27858544
Alignment:
173 atggtcatcactaagcttataatgatatcttcataaataatatcta 218  Q
    ||||||||||||||   |||||||||||||||||||||||||||||    
27858499 atggtcatcactaaatctataatgatatcttcataaataatatcta 27858544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 27872303 - 27872351
Alignment:
21 tggtggtggacttcctgttgttggatctggtagaggactgcttggtggt 69  Q
    ||||||||||||||||||||| |||||| || ||||||||| |||||||    
27872303 tggtggtggacttcctgttgtaggatctagtggaggactgcctggtggt 27872351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 27872450 - 27872493
Alignment:
18 tggtggtggtggacttcctgttgttggatctggtagaggactgc 61  Q
    |||||||||||||||||||||||| |||| |||| |||||||||    
27872450 tggtggtggtggacttcctgttgtaggatttggtggaggactgc 27872493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 27884406 - 27884453
Alignment:
22 ggtggtggacttcctgttgttggatctggtagaggactgcttggtggt 69  Q
    |||||||||||||||| ||| ||||||||| ||||||||| |||||||    
27884406 ggtggtggacttcctggtgtaggatctggtggaggactgcctggtggt 27884453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 27885686 - 27885733
Alignment:
22 ggtggtggacttcctgttgttggatctggtagaggactgcttggtggt 69  Q
    |||||||||||||||| ||| ||||||||| ||||||||| |||||||    
27885686 ggtggtggacttcctggtgtaggatctggtggaggactgcctggtggt 27885733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 27967599 - 27967646
Alignment:
22 ggtggtggacttcctgttgttggatctggtagaggactgcttggtggt 69  Q
    |||||||||||||||| ||| ||||||||| ||||||||| |||||||    
27967599 ggtggtggacttcctggtgtaggatctggtggaggactgcctggtggt 27967646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 28024585 - 28024632
Alignment:
22 ggtggtggacttcctgttgttggatctggtagaggactgcttggtggt 69  Q
    |||||||||||||||| ||| ||||||||| ||||||||| |||||||    
28024585 ggtggtggacttcctggtgtaggatctggtggaggactgcctggtggt 28024632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 28036931 - 28036978
Alignment:
22 ggtggtggacttcctgttgttggatctggtagaggactgcttggtggt 69  Q
    |||||||||||||||| ||| ||||||||| ||||||||| |||||||    
28036931 ggtggtggacttcctggtgtaggatctggtggaggactgcctggtggt 28036978  T

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Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 27872408 - 27872441
Alignment:
18 tggtggtggtggacttcctgttgttggatctggt 51  Q
    |||||||||||||||||||||||| |||||||||    
27872408 tggtggtggtggacttcctgttgtaggatctggt 27872441  T

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