View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9564_low_19 (Length: 346)
Name: NF9564_low_19
Description: NF9564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9564_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 12235625 - 12235938
Alignment:
| Q |
16 |
acatcaaatgtgtgattatcttactacatagaatccaaatcccaaaggtgaccataaaaattaagtaaggaaattgcaagaatagaaacagaaaaaacaa |
115 |
Q |
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| T |
12235625 |
acatcaaatgtgtgattatcttactacatagaatccaaatcccaaaggtgaccataaagattaagtaaggaaattgcaagaatagaaacagaaaaaacaa |
12235724 |
T |
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| Q |
116 |
ttaattttgaacacaagataaaatgtaggaatagttccaagtatcaaccttattcttgtataaatcttcatctaaaatatcttcaatagaccaagaaaaa |
215 |
Q |
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| T |
12235725 |
ttaattttgaacacaagataaaatgtaggaatagttccaagtatcaaccttattcttgtataaatcttcatctaaaatatcttcaatagaccaagaaaaa |
12235824 |
T |
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| Q |
216 |
atcaaatccatgaagccatagtcattgtaaggcgctttcttcttgcttgaacctcctctttccattgttctacaattaacttagtttcaaaaaggatcac |
315 |
Q |
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| T |
12235825 |
atcaaatccatgaagccatagtcattgtaaggcgctttcttattgcttgaacctcctctttccattgttctacaattaacttagtttcaaaaaggatcac |
12235924 |
T |
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| Q |
316 |
aacatgcaagcatt |
329 |
Q |
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| T |
12235925 |
aaaatgcaagcatt |
12235938 |
T |
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