View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9564_low_28 (Length: 239)
Name: NF9564_low_28
Description: NF9564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9564_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17544747 - 17544525
Alignment:
| Q |
1 |
gtaactgttataaccaactttgagaaagctctgacgatcctccttcggaacacttgtccccccgacacatgcatgaatccttacaccatggaatctacca |
100 |
Q |
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| T |
17544747 |
gtaactgttataaccaactttgagaaagcgctgacgatcctccttcggaacacttgtccccccgacacatgcatgaatctttacaccatggaatctacca |
17544648 |
T |
|
| Q |
101 |
agatcttgcataacctccttaatctgtaaaaccagctccatggttggggccaaaaccaaagcctggcaatgaaccaatccataatcaagcttcttcagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17544647 |
agatcttgcataacctccttaatctgtaaaaccagctccatggttggggccaaaaccaaagcctggcaatgaaccaatccataatcaagcttcttcagaa |
17544548 |
T |
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| Q |
201 |
ttccaatacagaatgtttctaac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
17544547 |
ttccaatacagaatgtttctaac |
17544525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 6241659 - 6241867
Alignment:
| Q |
9 |
tataaccaactttgagaaagctctgacgatcctccttcggaacacttgtccccccgacacatgcatgaatccttacaccatggaatctaccaagatcttg |
108 |
Q |
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| T |
6241659 |
tataaccaacttgcataaagcgctgaagatcctccacaggagcacttatcccgccgacacaagcatgaatccttacaccatggaattgaccaagatcttg |
6241758 |
T |
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| Q |
109 |
cataacctccttaatctgtaaaaccagctccatggttggggccaaaaccaaagcctggcaatgaaccaatccataatcaagcttcttcagaattccaata |
208 |
Q |
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| T |
6241759 |
cataacctgcttaatctgtaaagctagctcgttggttggggccaaaaccaaagcctggcaatgagccaattcataatcaagcatcttcagaattccaata |
6241858 |
T |
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| Q |
209 |
cagaatgtt |
217 |
Q |
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| T |
6241859 |
cagaatgtt |
6241867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 6250716 - 6250787
Alignment:
| Q |
134 |
agctccatggttggggccaaaaccaaagcctggcaatgaaccaatccataatcaagcttcttcagaattcca |
205 |
Q |
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|||||| | ||||||||||||||||| |||||||| ||||| |||||||||||||||| || || ||||||| |
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| T |
6250716 |
agctcccttgttggggccaaaaccaaggcctggcactgaactaatccataatcaagctgctgcaaaattcca |
6250787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 42717814 - 42717741
Alignment:
| Q |
132 |
ccagctccatggttggggccaaaaccaaagcctggcaatgaaccaatccataatcaagcttcttcagaattcca |
205 |
Q |
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|||||||| | |||||||||||||||||||||||||| |||||||| ||||||||||||| || || ||||||| |
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| T |
42717814 |
ccagctcccttgttggggccaaaaccaaagcctggcactgaaccaaaccataatcaagctgctgcaaaattcca |
42717741 |
T |
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