View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9564_low_36 (Length: 218)

Name: NF9564_low_36
Description: NF9564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9564_low_36
NF9564_low_36
[»] chr4 (8 HSPs)
chr4 (19-201)||(6759429-6759611)
chr4 (132-200)||(6652644-6652712)
chr4 (33-105)||(6729744-6729816)
chr4 (132-200)||(6740815-6740882)
chr4 (132-186)||(6530796-6530850)
chr4 (119-200)||(6762054-6762138)
chr4 (19-65)||(6838892-6838938)
chr4 (132-200)||(5596532-5596600)
[»] scaffold0286 (1 HSPs)
scaffold0286 (132-200)||(8247-8315)
[»] scaffold0373 (1 HSPs)
scaffold0373 (132-200)||(16930-16997)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 6759429 - 6759611
Alignment:
Q  19 atggaacactttcatgtagtagatgaggaggttgttattgtttctggtgatgacaataataatgcaagtgtttatggtggtgataatcaatatgaaatca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6759429 atggaacactttcatgtagtagatgaggaggttgttattgtttctggtgatgacaataataatgcaagtgtttatggtggtgataatcaatatgaaatca 6759528  T
Q  119 ttactgatcctaatcaagatgaaatcataagtgaagataagcactggcatgcagtggataagagttctattgtttctggtgac 201  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6759529 ttactgatcctaatcaagatgaaatcataagtgaagataagcattggcatgcagtggataagagttctattgtttctggtgac 6759611  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 6652644 - 6652712
Alignment:
Q  132 tcaagatgaaatcataagtgaagataagcactggcatgcagtggataagagttctattgtttctggtga 200  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||| | || ||||| |||||||    
T  6652644 tcaagataaaaatataagtgaagataagcactggcatgcagtggataagaatgctgttgttcctggtga 6652712  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 6729744 - 6729816
Alignment:
Q  33 tgtagtagatgaggaggttgttattgtttctggtgatgacaataataatgcaagtgtttatggtggtgataat 105  Q
    ||||||||| ||||||| |||||||||||||||  ||||| |||||||||  ||||||| ||| |||||||||    
T  6729744 tgtagtagacgaggaggatgttattgtttctggcaatgacgataataatgttagtgtttctggaggtgataat 6729816  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 6740815 - 6740882
Alignment:
Q  132 tcaagatgaaatcataagtgaagataagcactggcatgcagtggataagagttctattgtttctggtga 200  Q
    |||||||||||  ||||||||||||||| || ||||||||||| || ||||| ||||||||||||||||    
T  6740815 tcaagatgaaaatataagtgaagataagaac-ggcatgcagtgaatgagagtgctattgtttctggtga 6740882  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 6530850 - 6530796
Alignment:
Q  132 tcaagatgaaatcataagtgaagataagcactggcatgcagtggataagagttct 186  Q
    |||||||||||  ||||||||||||||| ||| ||||||| ||||||||||||||    
T  6530850 tcaagatgaaaatataagtgaagataagaacttgcatgcaatggataagagttct 6530796  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 6762054 - 6762138
Alignment:
Q  119 ttactgatcctaatcaagatgaaatcataagtgaagataa---gcactggcatgcagtggataagagttctattgtttctggtga 200  Q
    |||||| ||||||| |||||||||  ||||||||||||||   |||||| ||||||||| || ||| | ||||||||||||||||    
T  6762054 ttactggtcctaatgaagatgaaaatataagtgaagataataagcactgccatgcagtgaatgagaatgctattgtttctggtga 6762138  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 6838892 - 6838938
Alignment:
Q  19 atggaacactttcatgtagtagatgaggaggttgttattgtttctgg 65  Q
    ||||||| || |||||||||||||||||||| |||||||||||||||    
T  6838892 atggaacgctgtcatgtagtagatgaggaggatgttattgtttctgg 6838938  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 5596600 - 5596532
Alignment:
Q  132 tcaagatgaaatcataagtgaagataagcactggcatgcagtggataagagttctattgtttctggtga 200  Q
    |||| ||||||  |||||||| |||||||||||| |||||||| || ||| | ||||||||||||||||    
T  5596600 tcaaaatgaaaatataagtgatgataagcactggtatgcagtgaatgagaatactattgtttctggtga 5596532  T

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Target: scaffold0286 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 8247 - 8315
Alignment:
Q  132 tcaagatgaaatcataagtgaagataagcactggcatgcagtggataagagttctattgtttctggtga 200  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||| | || ||||| |||||||    
T  8247 tcaagataaaaatataagtgaagataagcactggcatgcagtggataagaatgctgttgttcctggtga 8315  T

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Target: scaffold0373 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 16997 - 16930
Alignment:
Q  132 tcaagatgaaatcataagtgaagataagcactggcatgcagtggataagagttctattgtttctggtga 200  Q
    |||||||||||  ||||||||||||||| || ||||||||||| || ||||| ||||||||||||||||    
T  16997 tcaagatgaaaatataagtgaagataagaac-ggcatgcagtgaatgagagtgctattgtttctggtga 16930  T

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