View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9564_low_4 (Length: 612)

Name: NF9564_low_4
Description: NF9564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9564_low_4
NF9564_low_4
[»] chr4 (4 HSPs)
chr4 (189-595)||(3634876-3635282)
chr4 (17-135)||(3635338-3635456)
chr4 (18-134)||(3644771-3644887)
chr4 (522-565)||(7214530-7214573)
[»] scaffold0067 (1 HSPs)
scaffold0067 (317-368)||(25590-25641)
[»] chr1 (3 HSPs)
chr1 (522-561)||(41017416-41017455)
chr1 (522-584)||(6427358-6427420)
chr1 (520-560)||(40747786-40747826)
[»] chr6 (2 HSPs)
chr6 (518-556)||(13211298-13211336)
chr6 (522-575)||(9195752-9195805)
[»] chr8 (1 HSPs)
chr8 (521-562)||(34201057-34201098)
[»] chr5 (3 HSPs)
chr5 (520-569)||(38749567-38749616)
chr5 (522-594)||(3751909-3751981)
chr5 (520-560)||(18919035-18919075)
[»] chr3 (1 HSPs)
chr3 (522-558)||(28576724-28576760)


Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 189 - 595
Target Start/End: Complemental strand, 3635282 - 3634876
Alignment:
Q  189 gacccatttggtccctcaaaattttcttgtagtccaatttagtcacgacacaaaataatacacaaactagtttctgatattttcatactggaagaaatta 288  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3635282 gacccatttggtccctcaaaatttgctcgtagtccaatttagtcacgacacaaaataatacacaaactagtttctgatattttcatactggaagaaatta 3635183  T
Q  289 attcctgttacactgagtcggggactactaatttctcatttgtataacaatatcatagactaatttgagtattattttttgtcaggactaaattggactg 388  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3635182 attcctgttacactgagtctgggactactaatttctcatttgtataacaatatcatagactaatttgagtattattttttgtcaggattaaattggactg 3635083  T
Q  389 caagctaacaaattgtgtcttcactgcttattaaattgatactacaataatttgttgggtcatagactcctagtaacctatgaagcacaaacacaaatac 488  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3635082 caagctaacaaattgtgtcttcactacttattaaattgatactacaataatttgttgggtcatagactcctagtaacctatgaagcacaaacacaaatac 3634983  T
Q  489 ggacccaacatgacacaaacatgtaaacgttgataataatttgagaaaatgacaaaatttaatctaattatatgcgttggtttcgtgccagtgttgaaca 588  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3634982 ggacccgacatgacacaaacatgtaaacgttgataataatttgagaaaatgacaaaatttaatctaattatatgcgttggtttcgtgccagtgttgaaca 3634883  T
Q  589 ccacacc 595  Q
    |||||||    
T  3634882 ccacacc 3634876  T

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Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 3635456 - 3635338
Alignment:
Q  17 aggaccaaacaatgcaatggaagcagattcaacagcaccatatattgctgcatacaacagtgagtctggccaaatactgatcatatataaaccaacagag 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3635456 aggaccaaacaatgcaatggaagcagattcaacagccccatatattgctgcatacaacagtgagtctggccaaatactgatcatatataaaccaacagag 3635357  T
Q  117 aattcccacattctgcaac 135  Q
    |||||||||||||||||||    
T  3635356 aattcccacattctgcaac 3635338  T

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Target: chr4; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 3644887 - 3644771
Alignment:
Q  18 ggaccaaacaatgcaatggaagcagattcaacagcaccatatattgctgcatacaacagtgagtctggccaaatactgatcatatataaaccaacagaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |    
T  3644887 ggaccaaacaatgcaatggaagcagattcaacagcaccatatattgctgcatagagcagtgagtctggccaaatactgatcatatataaaccaacagaaa 3644788  T
Q  118 attcccacattctgcaa 134  Q
    |||||||||||||||||    
T  3644787 attcccacattctgcaa 3644771  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 522 - 565
Target Start/End: Complemental strand, 7214573 - 7214530
Alignment:
Q  522 taataatttgagaaaatgacaaaatttaatctaattatatgcgt 565  Q
    ||||||||||||||||| ||| |||||||| |||||||||||||    
T  7214573 taataatttgagaaaatcacataatttaatgtaattatatgcgt 7214530  T

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Target: scaffold0067 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 25641 - 25590
Alignment:
Q  317 taatttctcatttgtataacaatatcatagactaatttgagtattatttttt 368  Q
    |||||| |||||| |||||  |||||| ||||||||||||||||||||||||    
T  25641 taatttgtcatttatataaagatatcacagactaatttgagtattatttttt 25590  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 522 - 561
Target Start/End: Complemental strand, 41017455 - 41017416
Alignment:
Q  522 taataatttgagaaaatgacaaaatttaatctaattatat 561  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  41017455 taataatttgagaaaatgacataatttaatgtaattatat 41017416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 522 - 584
Target Start/End: Original strand, 6427358 - 6427420
Alignment:
Q  522 taataatttgagaaaatgacaaaatttaatctaattatatgcgttggtttcgtgccagtgttg 584  Q
    ||||||||||||||||| ||| |||| ||| |||||||||| |||||| ||||| ||| ||||    
T  6427358 taataatttgagaaaatcacataattcaatgtaattatatgtgttggtgtcgtgtcagggttg 6427420  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 560
Target Start/End: Complemental strand, 40747826 - 40747786
Alignment:
Q  520 gataataatttgagaaaatgacaaaatttaatctaattata 560  Q
    ||||||||||||||||||||||| |||| ||| ||||||||    
T  40747826 gataataatttgagaaaatgacataattcaatgtaattata 40747786  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 518 - 556
Target Start/End: Complemental strand, 13211336 - 13211298
Alignment:
Q  518 ttgataataatttgagaaaatgacaaaatttaatctaat 556  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  13211336 ttgataataatttgagaaaatgacataatttaatataat 13211298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 575
Target Start/End: Complemental strand, 9195805 - 9195752
Alignment:
Q  522 taataatttgagaaaatgacaaaatttaatctaattatatgcgttggtttcgtg 575  Q
    ||||||||||||||||||||| |||||| | |||||||||| || ||| |||||    
T  9195805 taataatttgagaaaatgacataatttagtgtaattatatgtgtcggtgtcgtg 9195752  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 562
Target Start/End: Complemental strand, 34201098 - 34201057
Alignment:
Q  521 ataataatttgagaaaatgacaaaatttaatctaattatatg 562  Q
    |||||||||||||||||||||| |||| ||| ||||||||||    
T  34201098 ataataatttgagaaaatgacataattcaatgtaattatatg 34201057  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 38749616 - 38749567
Alignment:
Q  520 gataataatttgagaaaatgacaaaatttaatctaattatatgcgttggt 569  Q
    ||||||||||||| ||||||||| |||| ||| |||||||||| ||||||    
T  38749616 gataataatttgaaaaaatgacataattcaatgtaattatatgtgttggt 38749567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 594
Target Start/End: Complemental strand, 3751981 - 3751909
Alignment:
Q  522 taataatttgagaaaatgacaaaatttaatctaattatatgcgttggtttcgtgccagtgttgaacaccacac 594  Q
    ||||||||||||||||| ||| || | | | |||||||||| ||| || ||||| ||||||||||||| ||||    
T  3751981 taataatttgagaaaatcacataactaagtataattatatgtgttagtatcgtgtcagtgttgaacacgacac 3751909  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 560
Target Start/End: Complemental strand, 18919075 - 18919035
Alignment:
Q  520 gataataatttgagaaaatgacaaaatttaatctaattata 560  Q
    ||||||||||||||||||||||| |||||||  ||||||||    
T  18919075 gataataatttgagaaaatgacataatttaagttaattata 18919035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 558
Target Start/End: Original strand, 28576724 - 28576760
Alignment:
Q  522 taataatttgagaaaatgacaaaatttaatctaatta 558  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  28576724 taataatttgagaaaatgacaaaattgaatgtaatta 28576760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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