View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9564_low_5 (Length: 591)
Name: NF9564_low_5
Description: NF9564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9564_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 9 - 573
Target Start/End: Original strand, 36918033 - 36918580
Alignment:
| Q |
9 |
cagagagatgaacggccactcttatgaaaaatactcagttttttaggacaagtggcctcaatcatgaccttactttcatttacttctgcctgttgtgttg |
108 |
Q |
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| T |
36918033 |
cagagagatgaacggccactcttatgaaaaatactcagttttttaggacaagtggcctcaatcatgaccttactttcatttacttctgcctgttgtgttg |
36918132 |
T |
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| Q |
109 |
taactaactagtctgagttattttgtccttcaagcctgaccttatgtaacgaaattgttcagtctgtggcctaaccaattcctattaccccccaggttaa |
208 |
Q |
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| T |
36918133 |
taactaactagtctgagttattttgtccttcaagcctgaccttatgtaacgaaattgttcagtctgtggcctaaccaattcctattaccccccaggttaa |
36918232 |
T |
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| Q |
209 |
ctttattcatataataaataactcaaagagtaaataacttaatcctcaagtgctctctccctattgtcttaaatataagtaaataggtaaatgtatttga |
308 |
Q |
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| T |
36918233 |
ctttattcatataa----------------taaataacttaatcatcaagtgctctctccctattgtcttaaatataagtaaataggtaaatgtatttga |
36918316 |
T |
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| Q |
309 |
tacaaatttaagaccgaagatattatatttcttttgattatataatgtttaacattatggtatccttaggttttattgggtaataagatgtccaatatcc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36918317 |
tacaaatttaagaccgaagatattatatttcttttgattatatcatgtttaacattatggtatccttaggttttattgggtaataagatgtccaatatcc |
36918416 |
T |
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| Q |
409 |
aatcattaaatcatatgtaannnnnnnnnnatatttatatcattttaaaatgatattaaacttgaaagtaattttatacacataatactagcaccaaaca |
508 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36918417 |
aatcattaaatcatatgtaa-tttttttttatatttatatcattttaaaatgatattaaacttgaaagtaattttatacacataatactagcaccaaaca |
36918515 |
T |
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| Q |
509 |
aaagtatggagtatcaatttttcactcatgttatatagaatagggagtacaagtagagtactcaa |
573 |
Q |
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| T |
36918516 |
aaagtatggagtatcaatttttcactcatgttatatagaatagggagtacaagtagagtactcaa |
36918580 |
T |
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