View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9565_high_4 (Length: 249)
Name: NF9565_high_4
Description: NF9565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9565_high_4 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 42311958 - 42312199
Alignment:
| Q |
8 |
tggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggggaacacgacgtcataaccgctgttaagaagat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| |
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| T |
42311958 |
tggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcgaagaacacgacgtcataaccactattaagaagat |
42312057 |
T |
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| Q |
108 |
gagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaat |
207 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42312058 |
gagggtgtacaaagtaactgtagggatgaaagagaggcaaatgtgaaatgaggttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaat |
42312157 |
T |
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| Q |
208 |
atataaaacaatgtcgataaactttaaaagtgataatatgat |
249 |
Q |
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| T |
42312158 |
atataaaacaatgtcgataaactttaaaagtgataatatgat |
42312199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 20908907 - 20909148
Alignment:
| Q |
8 |
tggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggggaacacgacgtcataaccgctgttaagaagat |
107 |
Q |
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| T |
20908907 |
tggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggagaacacgacgtcatagtcgctgttaagaagat |
20909006 |
T |
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| Q |
108 |
gagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaat |
207 |
Q |
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| T |
20909007 |
gagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgttttaggagtgagcataaaatttagggttgaaagacaaat |
20909106 |
T |
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| Q |
208 |
atataaaacaatgtcgataaactttaaaagtgataatatgat |
249 |
Q |
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| T |
20909107 |
atataaaacaatgtcgataaactttaaaagtgataatatgat |
20909148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 20923355 - 20923596
Alignment:
| Q |
8 |
tggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggggaacacgacgtcataaccgctgttaagaagat |
107 |
Q |
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| T |
20923355 |
tggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggagaacacgacgtcatagtcgctgttaagaagat |
20923454 |
T |
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| Q |
108 |
gagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||| |
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| T |
20923455 |
gagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgttttaggagtgagcataaaatttagggttgaaagacaaat |
20923554 |
T |
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| Q |
208 |
atataaaacaatgtcgataaactttaaaagtgataatatgat |
249 |
Q |
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| T |
20923555 |
atataaaacaatgtcgataaactttaaaagtgataatatgat |
20923596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 47247455 - 47247214
Alignment:
| Q |
8 |
tggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggggaacacgacgtcataaccgctgttaagaagat |
107 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| ||||| |
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| T |
47247455 |
tggtggtggtgaaacttctcttagtgatttgtttgatttggattttagtggtggtagagatagtcggagaacacgacgtcatagccgctgttaaaaagat |
47247356 |
T |
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| Q |
108 |
gagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaat |
207 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
47247355 |
gagggtgtacgaagtaactgtcgggatgaaagagagacaaatgtgaaatgaggttcaatgttttatgagtgagcataaaatgcagggttgaaagacaaat |
47247256 |
T |
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| Q |
208 |
atataaaacaatgtcgataaactttaaaagtgataatatgat |
249 |
Q |
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| T |
47247255 |
atataaaacaatgtcgataaactttaaaagtgataatatgat |
47247214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 41325840 - 41326051
Alignment:
| Q |
8 |
tggtggtggtgaagcttctcttagtgattggtttgatttggattttagtggtggcagagatagtcggggaacacgacgtcataaccgctgttaagaagat |
107 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||||||| |
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| T |
41325840 |
tggttgtggcgaagcttctcttagtgattggtttgatttggatttttgtggtggcagagatggtcggagaacacgacgtcatagccgctgttaagaagat |
41325939 |
T |
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| Q |
108 |
gagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgttttatgagtgagcataaaatgcagggctgaaaaacaaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| |||||| |
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| T |
41325940 |
gagggtgtacaaagtaactgtcgggatgaaagagaggcaaatgtgaaatgaggttcaatgttttat-agtgagcataaaatgtaggtctgaaagacaaat |
41326038 |
T |
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| Q |
208 |
atataaaacaatg |
220 |
Q |
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||||||||||||| |
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| T |
41326039 |
atataaaacaatg |
41326051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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