View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9565_low_11 (Length: 217)
Name: NF9565_low_11
Description: NF9565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9565_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 12650335 - 12650167
Alignment:
| Q |
15 |
atggtggttacaaagaatgttagaaggaaataattcagaaataaaattaatattcattctcaaattaaaatgattatcaccattatttgtcatat--ata |
112 |
Q |
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| T |
12650335 |
atggtggttacaaagaatgttagaaggaaataattcagaaataaaattaatattcattctcaaattaaaatgattatcaccattatttgtcatatatata |
12650236 |
T |
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| Q |
113 |
tcacgtgactaaccaacaaggttttggttcacttgtatttctacctaattcacctaaatattttttacc |
181 |
Q |
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| T |
12650235 |
tcacgtgactaaccaacaaggttttggttcacttgtatttctacctaattcacctaaatattttttacc |
12650167 |
T |
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