View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9566_high_10 (Length: 217)
Name: NF9566_high_10
Description: NF9566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9566_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 6662766 - 6662965
Alignment:
| Q |
1 |
aggggtaaaattcagataaaaagtgaaacgctaggttacttaaaatagtttatcnnnnnnnnnnncgccaacaacaaaagattataatgagtaataaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6662766 |
aggggtaaaattcagataaaaagtgaaacgctaggttacttaaaatagtttataaaaaaaaaaaacgccaacaacaaaagattataatgagtaataaatt |
6662865 |
T |
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| Q |
101 |
caaatagaagactgaagtttctccaaacaacaaaatctaaaatatagaagaaaaactgtaactaatttaatcttttacagcttgataacatcctaaactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6662866 |
caaatagaagactgaagtttctccaaacaacaaaatctaaaatatagaagaaaaaccgtaactaatttaatcttttacagcttgataacatcctaaactt |
6662965 |
T |
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