View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9566_high_2 (Length: 292)

Name: NF9566_high_2
Description: NF9566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9566_high_2
NF9566_high_2
[»] chr4 (3 HSPs)
chr4 (18-280)||(2884331-2884593)
chr4 (113-282)||(2900466-2900635)
chr4 (124-282)||(2874335-2874493)
[»] chr2 (3 HSPs)
chr2 (130-280)||(44225341-44225491)
chr2 (130-280)||(44236155-44236305)
chr2 (130-280)||(44213180-44213330)
[»] chr8 (1 HSPs)
chr8 (186-268)||(4498067-4498149)
[»] chr7 (7 HSPs)
chr7 (156-282)||(39550630-39550756)
chr7 (165-282)||(39577239-39577356)
chr7 (156-268)||(39541372-39541484)
chr7 (168-282)||(39360866-39360980)
chr7 (156-282)||(39567423-39567549)
chr7 (168-257)||(39335082-39335171)
chr7 (209-282)||(42135603-42135676)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 2884593 - 2884331
Alignment:
Q  18 gaagttacctgaaagaaaaaatagattaaggtcatgtttcgataaacttatatatcttcatatagtgttcaccaaaaacttgaaagaatggactcaagat 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884593 gaagttacctgaaagaagaaatagattaaggtcatgtttcgataaacttatatatcttcatatagtgttcaccaaaaacttgaaagaatggactcaagat 2884494  T
Q  118 ataaactttgacttacttcttgaagaaagtcagctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgagg 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884493 ataaactttgacttacttcttgaagaaagtccgctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgagg 2884394  T
Q  218 tccttggtagacaatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctc 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884393 tccttggtagacaatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctc 2884331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 113 - 282
Target Start/End: Original strand, 2900466 - 2900635
Alignment:
Q  113 aagatataaactttgacttacttcttgaagaaagtcagctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcg 212  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||     
T  2900466 aagatataaactttgacttacttcttgaagaaagtcagctacccctttcctctcaggacatttgaaaccaactgattcaaaaaagtcaagaacatgttca 2900565  T
Q  213 cgaggtccttggtagacaatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctctg 282  Q
    || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2900566 cgcggtccttgatagacaatttgaccatcggatataagaataatgtcatcaaaaagttcataagtctctg 2900635  T

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Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 124 - 282
Target Start/End: Complemental strand, 2874493 - 2874335
Alignment:
Q  124 tttgacttacttcttgaagaaagtcagctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttg 223  Q
    ||||||||||||||||||| || |||||  | ||||||||||||||||||||||||||||  ||||||||||||||||||| || ||| |||||||||||    
T  2874493 tttgacttacttcttgaaggaaatcagcaacgcctttcctctcaggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttg 2874394  T
Q  224 gtagacaatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctctg 282  Q
    ||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  2874393 gtaaacaatttcaccatcagataaaagaataatgtcatcaaaaagttcataagtctctg 2874335  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 130 - 280
Target Start/End: Original strand, 44225341 - 44225491
Alignment:
Q  130 ttacttcttgaagaaagtcagctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagac 229  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||| | || ||||||||| ||||||| || |||||| || || ||||| ||    
T  44225341 ttacttcttgaagaaagtcagcagcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatac 44225440  T
Q  230 aatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctc 280  Q
    || ||| |||||||| || |  ||||||||||||||||| |||||||||||    
T  44225441 aacttggccatcagaaattaagataatgtcatcaaaaagatcataagtctc 44225491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 130 - 280
Target Start/End: Original strand, 44236155 - 44236305
Alignment:
Q  130 ttacttcttgaagaaagtcagctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagac 229  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||| | || ||||||||| ||||||| || |||||| || || ||||| ||    
T  44236155 ttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatac 44236254  T
Q  230 aatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctc 280  Q
    || ||| |||||||| || |  ||||||||||||||||| |||||||||||    
T  44236255 aacttggccatcagagattaagataatgtcatcaaaaagatcataagtctc 44236305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 130 - 280
Target Start/End: Original strand, 44213180 - 44213330
Alignment:
Q  130 ttacttcttgaagaaagtcagctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagac 229  Q
    |||||||||||||||| |||||  |||||||||| ||||||||||||||||| |  ||||| ||||| ||||||| || |||||| || || ||||| ||    
T  44213180 ttacttcttgaagaaaatcagcaacacctttcctttcaggacatttgaaacccatagattcgaaaaagtcaagaacatattcgcgggggccatggtatac 44213279  T
Q  230 aatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctc 280  Q
    || ||| ||||||||||| |  ||||||||||||||||| |||||||||||    
T  44213280 aacttggccatcagatattaagataatgtcatcaaaaagatcataagtctc 44213330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 4498149 - 4498067
Alignment:
Q  186 gattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcagatataagaataatgtcatcaaaaag 268  Q
    |||||||| ||||||| ||| ||||| || || |||||||| |||| |||||| |||||||||||||||||||||||||||||    
T  4498149 gattcaaagaattcaacaatgtgttcacgtggaccttggtacacaacttgaccctcagatataagaataatgtcatcaaaaag 4498067  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 282
Target Start/End: Original strand, 39550630 - 39550756
Alignment:
Q  156 cctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcagatataagaataa 255  Q
    |||||||| ||||||||||| ||||||| |||||| ||||||||||| |  || || || || |||||||| | ||| |||| |||||| |  |||||||    
T  39550630 cctttcctatcaggacatttaaaaccaattgattcgaaaaattcaagcacgtgctcacggggaccttggtatataatgtgactatcagagagtagaataa 39550729  T
Q  256 tgtcatcaaaaagttcataagtctctg 282  Q
    |||| |||||||| |  ||||||||||    
T  39550730 tgtcgtcaaaaagattgtaagtctctg 39550756  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 282
Target Start/End: Original strand, 39577239 - 39577356
Alignment:
Q  165 tcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcagatataagaataatgtcatcaa 264  Q
    |||||||| |||||||| | |||  ||||||||||||| |  ||||| | ||| || ||||| ||||| || || ||||| |  ||||||||||| ||||    
T  39577239 tcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggaccctggtacacaatgtgcccctcagagagtagaataatgtcgtcaa 39577338  T
Q  265 aaagttcataagtctctg 282  Q
    |||| |||||||||||||    
T  39577339 aaagatcataagtctctg 39577356  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 268
Target Start/End: Original strand, 39541372 - 39541484
Alignment:
Q  156 cctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcagatataagaataa 255  Q
    |||||||| ||||||||||| ||||| | |||||| ||||||||||| |  || || || || |||||||| | ||| |||| |||||| |  |||||||    
T  39541372 cctttcctatcaggacatttaaaaccgattgattcgaaaaattcaagcacgtgctcacggggaccttggtatataatgtgactatcagagagtagaataa 39541471  T
Q  256 tgtcatcaaaaag 268  Q
    | |||||||||||    
T  39541472 tttcatcaaaaag 39541484  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 282
Target Start/End: Complemental strand, 39360980 - 39360866
Alignment:
Q  168 ggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcagatataagaataatgtcatcaaaaa 267  Q
    |||||||| ||||||| |||||| ||||||||||| |  ||||| || || |||||||| | ||| |||| |||||| |  || |||||||| |||||||    
T  39360980 ggacatttaaaaccaattgattcgaaaaattcaagcacgtgttcccggggaccttggtaaataatgtgactatcagagagtagtataatgtcgtcaaaaa 39360881  T
Q  268 gttcataagtctctg 282  Q
    | |  ||||||||||    
T  39360880 gattgtaagtctctg 39360866  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 282
Target Start/End: Original strand, 39567423 - 39567549
Alignment:
Q  156 cctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcagatataagaataa 255  Q
    |||||||| || |||||||| ||||| | |||||||||||||||||| |  ||||| || || |||||||| | |||  ||| |||||| |  |||||||    
T  39567423 cctttcctatctggacatttaaaaccgattgattcaaaaaattcaagtacgtgttcccggggaccttggtatataatgcgactatcagagagtagaataa 39567522  T
Q  256 tgtcatcaaaaagttcataagtctctg 282  Q
     ||| |||||||| |  ||||||||||    
T  39567523 cgtcgtcaaaaagattgtaagtctctg 39567549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 257
Target Start/End: Complemental strand, 39335171 - 39335082
Alignment:
Q  168 ggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcagatataagaataatg 257  Q
    |||||||| ||||||| |||||| ||||||||||| |  ||||| ||||| |||||||| | ||| |||| |||||| |  |||||||||    
T  39335171 ggacatttaaaaccaattgattcgaaaaattcaagcacgtgttcccgaggaccttggtatataatatgactatcagagagtagaataatg 39335082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 42135603 - 42135676
Alignment:
Q  209 ttcgcgaggtccttggtagacaatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctctg 282  Q
    |||||| ||||||||||| ||||||||||| || || |  || |||||||||||||| |||||| | |||||||    
T  42135603 ttcgcgtggtccttggtatacaatttgaccttctgaaagtaggataatgtcatcaaagagttcaaatgtctctg 42135676  T

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