View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9566_low_13 (Length: 259)
Name: NF9566_low_13
Description: NF9566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9566_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 4845732 - 4845528
Alignment:
| Q |
14 |
tttcgtgttcgctgttgtcaaagccaattaatttgaaataataatttaggtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgat |
113 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4845732 |
tttcgtattctctgttgtcaaagccaattaatttgaaataataatttaagtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgat |
4845633 |
T |
|
| Q |
114 |
tccgttaatgaaagcataactaggattcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatattct |
213 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||| ||||||| |||| ||||||||||||||||||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
4845632 |
tccgttaacgaaagcataaaaaggattcaattcgtttatgttgttcggaaagaaagttatgtttagcttcccatttggtttgatctgaatgcaatattct |
4845533 |
T |
|
| Q |
214 |
ttggt |
218 |
Q |
| |
|
||||| |
|
|
| T |
4845532 |
ttggt |
4845528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 71 - 216
Target Start/End: Complemental strand, 4783498 - 4783353
Alignment:
| Q |
71 |
ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattggtttgtgttgttgggaatgaaagt |
170 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4783498 |
ggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataactaggaatcaattggtttgtgttgttgggaatgaaagt |
4783399 |
T |
|
| Q |
171 |
tatgtttagcttctcatttgggttgatttgaatgcaatattctttg |
216 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||| ||||||||||| |
|
|
| T |
4783398 |
tatgtttagcttctcgtttggtttgatttggatggaatattctttg |
4783353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 71 - 216
Target Start/End: Complemental strand, 4815927 - 4815782
Alignment:
| Q |
71 |
ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattggtttgtgttgttgggaatgaaagt |
170 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4815927 |
ggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataactaggactcaattggtttgtgttgttgggaatgaaagt |
4815828 |
T |
|
| Q |
171 |
tatgtttagcttctcatttgggttgatttgaatgcaatattctttg |
216 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||| ||||||||||| |
|
|
| T |
4815827 |
tatgtttagcttctcgtttggtttgatttggatggaatattctttg |
4815782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 71 - 222
Target Start/End: Complemental strand, 4696853 - 4696702
Alignment:
| Q |
71 |
ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattggtttgtgttgttgggaatgaaagt |
170 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| | |||||| ||||| ||||||||||||| |
|
|
| T |
4696853 |
ggtttgtgtaatagagaaaagaaggcattgacacaacttctattccgttaatgaaagcataataaggatttgactggtttatgttgctgggaatgaaagt |
4696754 |
T |
|
| Q |
171 |
tatgtttagcttctcatttgggttgatttgaatgcaatattctttggtgatt |
222 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
4696753 |
tatgtttaacttctcatttggtttggtttgaatgcaatattctttggtgatt |
4696702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 49 - 222
Target Start/End: Original strand, 4637267 - 4637440
Alignment:
| Q |
49 |
aaataataatttaggtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattggt |
148 |
Q |
| |
|
||||| |||||| |||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||| |||||| |||||| |
|
|
| T |
4637267 |
aaatagtaatttgggtcattgaggtttgtgtaatagagaaaagaaggcattgacacaacttcgatcccgttaataaaagcataacaaggatttgattggt |
4637366 |
T |
|
| Q |
149 |
ttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatattctttggtgatt |
222 |
Q |
| |
|
|| || |||| ||||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
4637367 |
ttatgctgttaggaatgaaagttatgtttaacttttcatttggtttgatttgtatgcaatattctttggtgatt |
4637440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 4711730 - 4711584
Alignment:
| Q |
76 |
gtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattggtttgtgttgttgggaatgaaagttatgt |
175 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| | || ||| ||||||| ||||||||||||||| |
|
|
| T |
4711730 |
gtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgc |
4711631 |
T |
|
| Q |
176 |
ttagcttctcatttgggttgatttgaatgcaatattctttggtgatt |
222 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4711630 |
ttagcttctcatttggtttgatttgaatgcaatattctttggtgatt |
4711584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 4653928 - 4654081
Alignment:
| Q |
71 |
ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattggtttgtgttgttgggaatgaaagt |
170 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |||||| | |||||||||||||||||||||||||| |
|
|
| T |
4653928 |
ggtttgagtaatagagaaaagaaggcatagacacaacttcaattccattaatgaaagcataataaggatttgaatggtttgtgttgttgggaatgaaagt |
4654027 |
T |
|
| Q |
171 |
tatgtttagcttctcatttgggttgatttgaatgcaatattctttggtgattgt |
224 |
Q |
| |
|
|||||||||||||| ||| || | || ||| ||||||||||||||||||||||| |
|
|
| T |
4654028 |
tatgtttagcttcttattcggttggacttggatgcaatattctttggtgattgt |
4654081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 4864309 - 4864508
Alignment:
| Q |
26 |
tgttgtcaaagccaattaatttgaaataataatttaggtcatctgggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaa |
125 |
Q |
| |
|
||||||||||| ||| | |||| |||||||| ||| |||||| ||||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||| |
|
|
| T |
4864309 |
tgttgtcaaagtcaagtgatttcaaataatattttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaa |
4864408 |
T |
|
| Q |
126 |
agcataactaggattcaattggtttgtgttgttg---ggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatattctttggtgatt |
222 |
Q |
| |
|
|||||| |||||| |||| ||| | || ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4864409 |
ggcataataaggatttgattgatttatattattggccggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatattctttggtgatt |
4864508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 4673090 - 4673288
Alignment:
| Q |
26 |
tgttgtcaaagccaattaatttgaaataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatga |
124 |
Q |
| |
|
||||||| ||| ||| | |||| |||| ||||||| ||||| ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
4673090 |
tgttgtctaagtcaagtgatttcaaatgataatttgggtca-ctgaggtttgtgtaatagagaaaagaaggcattgacacaatttcgattccgttaatga |
4673188 |
T |
|
| Q |
125 |
aagcataactaggattcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatattctttggtgattgt |
224 |
Q |
| |
|
||||||| || ||| ||| ||| || || | ||||||||| ||||||||||||||||||| || |||||||| || ||| |||||||||||||||| |
|
|
| T |
4673189 |
aagcatatttaacatttgatttgttcatgatgcttggaatgaaatttatgtttagcttctcattgggcttgatttggatacaaaattctttggtgattgt |
4673288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 221
Target Start/End: Original strand, 4644139 - 4644277
Alignment:
| Q |
71 |
ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattggtttgtgttgttgggaatgaaagt |
170 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| || || ||||||||||||| |
|
|
| T |
4644139 |
ggtttgtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataactaacatt-----------tgatg-tgggaatgaaagt |
4644226 |
T |
|
| Q |
171 |
tatgtttagcttctcatttgggttgatttgaatgcaatattctttggtgat |
221 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||| |||||| |||| |
|
|
| T |
4644227 |
tatgtttagcttctcatttgttttaatttggatgcaatactctttgatgat |
4644277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 224
Target Start/End: Original strand, 4667331 - 4667523
Alignment:
| Q |
29 |
tgtcaaagccaattaatttgaaataataatttaggtcatctg-ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaag |
127 |
Q |
| |
|
|||||||| ||| |||| | |||| ||||||| ||||| ||| |||||||||||||||||||||| ||||| ||||||| || |||||||| ||||||| |
|
|
| T |
4667331 |
tgtcaaagtcaagtaatgtcaaatgataatttgggtca-ctgaggtttgtgtaatagagaaaagacggcatagacacaatctcaattccgttgatgaaag |
4667429 |
T |
|
| Q |
128 |
cataactaggattcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcatttgggttgatttgaatgcaatattctttggtgattgt |
224 |
Q |
| |
|
|| | || ||| |||||||||||||| |||||||||||||||| || ||| ||||| | | ||| | || ||||||||||||||||||||||| |
|
|
| T |
4667430 |
caaa---agcatttaattggtttgtgtttttgggaatgaaagttacgtctagtttctccccttgtttggtatggatgcaatattctttggtgattgt |
4667523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 224
Target Start/End: Original strand, 4631364 - 4631515
Alignment:
| Q |
76 |
gtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataactaggattcaattggtttgtgttg------ttgggaatgaaag |
169 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||| |||||||| ||| | || |||||||||||||| ||||||||||||| |
|
|
| T |
4631364 |
gtgtaatagagaaaagaaggcatagacacaatctcaattccgttgatgaaagctaaacca---tttaattggtttgtgtttgtatttttgggaatgaaag |
4631460 |
T |
|
| Q |
170 |
ttatgtttagcttctcatttgggttgatttgaatgcaatattctttggtgattgt |
224 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
4631461 |
ttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgattgt |
4631515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 18925405 - 18925344
Alignment:
| Q |
71 |
ggtttgtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaatgaaagcataa |
132 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | || |||||||| |||||||||||| |
|
|
| T |
18925405 |
ggtttgtgtaatagagaaaagaaggcatggacacgatctcaattccgttgatgaaagcataa |
18925344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University