View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9566_low_18 (Length: 240)
Name: NF9566_low_18
Description: NF9566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9566_low_18 |
 | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
| [»] scaffold0303 (1 HSPs) |
| | |
|
| [»] scaffold0004 (2 HSPs) |
| | |
|
| [»] scaffold0882 (1 HSPs) |
| | |
|
| [»] scaffold0766 (1 HSPs) |
| | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
|
| [»] scaffold0031 (1 HSPs) |
| | |
|
| [»] scaffold1744 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0097 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 30972 - 30740
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30972 |
tcccaaagtttcaagagaggtgatatctcttgggtttagagactcttttacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
30873 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30872 |
gcttatcccgtttaaaagctaggttagtgaaaatctcaaggggcttttccttggggactagacgtaggccttggtgttttaggccgaactaggataaatt |
30773 |
T |
|
| Q |
200 |
tcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
30772 |
tcttgtgtcattttctctcatccctttatctct |
30740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 20727143 - 20726911
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20727143 |
tcccaaagtttcaagagaggtgatatctcttgggtttagagactcttttacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
20727044 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20727043 |
gcttatcccgtttaaaagctaggttagtgaaaatctcaaggggcttttccttggggactagacgtaggccttggtgttttaggccgaactaggataaatt |
20726944 |
T |
|
| Q |
200 |
tcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
20726943 |
tcttgtgtcattttctctcatccctttatctct |
20726911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 11023455 - 11023685
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
||||||||||||||| | || |||| |||||| ||||||| ||||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
11023455 |
tcccaaggtttcaagagaagttatatatcttggttttagagactcttttacaaagaattgttttgtttgaagagtgctca-ttatttgtaaatgttacta |
11023553 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggctttc-cttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||| ||||||| | | | ||| ||||||||||| || ||| |||||| ||||||| ||||||||| ||||||||| ||||||| |||||||| |
|
|
| T |
11023554 |
gcttatcctccttaaaagct-gatcagtaaaaatctcaagcggatttttcttggggactagacataggccttgatgttttaggtcgaactaagataaact |
11023652 |
T |
|
| Q |
200 |
tcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||| |
|
|
| T |
11023653 |
tcttatgtcattttctctcatccctctatctct |
11023685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 24780257 - 24780342
Alignment:
| Q |
147 |
tccttgggaactagacgtaggccttggtgttttaggccgaactaggataaacttcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24780257 |
tccttggggactagacgtaggccttggtgttttaggccgaactaggataaacttcttgtgtcattttctctcatccctttatctct |
24780342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 24780152 - 24780259
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
|||||| || ||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||||||||||| |
|
|
| T |
24780152 |
tcccaaagtatcaagagaggtgatatctcttgagtttagaggctcttctacaaatgattgttttgtttggagagtgttcgctatcttgtaaaggttacta |
24780251 |
T |
|
| Q |
101 |
gcttatcc |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
24780252 |
gcttatcc |
24780259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 39038498 - 39038730
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
39038498 |
tcccaaggtttcaagagaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttggagagtgctcgctatcttgtaaaggttacta |
39038597 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39038598 |
gcttatcccgtttaaaagctaggttagtgaaaatctcaaggggcttttccttggggactagacgtaggccttggtgttttaggccgaactaggataaact |
39038697 |
T |
|
| Q |
200 |
tcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| |
|
|
| T |
39038698 |
tcttgtgtctttttctctcacccctttatctct |
39038730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 186496 - 186285
Alignment:
| Q |
23 |
atatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggtt-actagcttatcccgtttaaaagtta |
121 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| | ||||||||| |||||||| ||| |||||||||||| ||||| ||||||||| |||||| || |
|
|
| T |
186496 |
atatctcttgagtttagaggctcttctataaagggtaattttgtttggagagtgcttgctattttgtaaaggtttactagtttatcccgtataaaagcta |
186397 |
T |
|
| Q |
122 |
ggttagtgaaaatctcaaggggcttt-ccttgggaactagacgtaggccttggtgttttaggccgaactaggataaacttcttgtgtcattttctctcag |
220 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||| |||| |||||||||| |
|
|
| T |
186396 |
agttagtgaaaatctcaaggggcttttccttggggactagacgtagaccttggtgttttaggctgaactagaataaacttcttatgtccttttctctcat |
186297 |
T |
|
| Q |
221 |
ccctttatctct |
232 |
Q |
| |
|
|||||||||||| |
|
|
| T |
186296 |
ccctttatctct |
186285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0303 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 21166 - 21398
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
21166 |
tcccaaggtttcaagagaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttggagagtgctagctatcttgtaaaggttacta |
21265 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21266 |
gcttatcccgtttaaaagctaggttagtgaaaatctcaaggggcttttccttggggactagacgtaggccttggtgttttaggccgaactaggataaact |
21365 |
T |
|
| Q |
200 |
tcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| |
|
|
| T |
21366 |
tcttgtgtctttttctctcatccctttatctct |
21398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 113184 - 112952
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
113184 |
tcccaaagtttcaagagaggtgatatctcttgggttaagagactcttctacaaaggattgttttgtttgaagagtgctcgcttatttataaaggttacta |
113085 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
113084 |
gcttatcccgtttaaaagctaggttagtgaaaatctcaagggacttttccttggggactagacgtaggccttggtgttttaggccgaactaggataaact |
112985 |
T |
|
| Q |
200 |
tcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| |
|
|
| T |
112984 |
tcttgtgtctttttctctcatccctttatctct |
112952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 353904 - 353712
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
353904 |
tcccaaggtttcaagagaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttggagagtgctcgctatcttgtaaaggttacta |
353805 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactagg |
192 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
353804 |
gcttatcctgtttaaaagctaggttagtgaaaatctcaaggggcttttccttggggactagacgtaggccttggtgttttaggccgaactagg |
353712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 3274204 - 3274436
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
3274204 |
tcccaaggtttcaagagaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttggagagtgctcgctatcttgtaaaggttacta |
3274303 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3274304 |
gcttatcccgtttaaaagctaggttagtgaaaatctcaaggggctttttcttggggactagacgtaggccttggtgttttaggccgaactaggataaact |
3274403 |
T |
|
| Q |
200 |
tcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| |
|
|
| T |
3274404 |
tcttgtgtctttttctctcatccctttatctct |
3274436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 3277614 - 3277846
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
3277614 |
tcccaaggtttcaagagaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttggagagtgctcgctatcttgtaaaggttacta |
3277713 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3277714 |
gcttatcccgtttaaaagctaggttagtgaaaatctcaaggggctttttcttggggactagacgtaggccttggtgttttaggccgaactaggataaact |
3277813 |
T |
|
| Q |
200 |
tcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| |
|
|
| T |
3277814 |
tcttgtgtctttttctctcatccctttatctct |
3277846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 39925572 - 39925803
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
39925572 |
tcccaaggtttcaagagaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttggagagtgctcgctatcttgtaaaggttacta |
39925671 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39925672 |
gcttatcccgtttaaaagctaggttagtgaaaatctcaaggggcttttccttggggactagacgtaggccttggtgttttaggccgaactaggataaact |
39925771 |
T |
|
| Q |
200 |
tcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| |
|
|
| T |
39925772 |
tcttgtgtcgttttctctca-tcctttatctct |
39925803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 5027139 - 5026907
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| |||||| |
|
|
| T |
5027139 |
tcccaaggtttcaagagaggtgatatctcttaggtttagaggctcttctacaaaggattgttttgtttggagagtgcttgctatcttgtaaagattacta |
5027040 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5027039 |
gcttatcccgtttaaaagctaggttagtgaaaatctcaaggggcttttccttggggactagacgtaggccttggtgttttaggccgaactaggataaact |
5026940 |
T |
|
| Q |
200 |
tcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| |
|
|
| T |
5026939 |
tcttgtgtctttttctctcatccctttatctct |
5026907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 21198400 - 21198632
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21198400 |
tcccaaagtttcaagagaggtgatatctcttgagtttagagactcttctacaaaggattgttttgtttgaagagtgctcgcatatttgtaaaggttacta |
21198499 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21198500 |
gcttatcccgtttaaaagctaggttagtgaaaatctcaaggggcttttccttggggactagacgtaggccttggtgttttaggccgaactaggataaact |
21198599 |
T |
|
| Q |
200 |
tcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
| |||||||||||| ||||| |||||||||||| |
|
|
| T |
21198600 |
tgttgtgtcattttttctcatccctttatctct |
21198632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 16851365 - 16851597
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
16851365 |
tcccaaggtttcaagagaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttggagagtgctcgctatcttgtaaaggttacta |
16851464 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16851465 |
gcttatcccgtttaaaagctaggttagtgaaaatctcaaggggctttttcttggggactagacgtaggccttggtgttttaggccaaactaggataaact |
16851564 |
T |
|
| Q |
200 |
tcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| |
|
|
| T |
16851565 |
tcttgtgtctttttctctcatccctttatctct |
16851597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 52987032 - 52986800
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
|||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
52987032 |
tcccaaagtttcaagagaggtgatctctcttgggtttagaggctcttctacaaagggtaattttgtttggagagtgctcgctattttgtaaaggttacta |
52986933 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
52986932 |
gcttatcccgtttaaaagctaagttagtgaaaatctcaagggtcttttccttggggactagacgtaggccttggtgttttaggccgaactaggataaatt |
52986833 |
T |
|
| Q |
200 |
tcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| |
|
|
| T |
52986832 |
tcttgtgtccttttctctcatccctttatctct |
52986800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 50944323 - 50944236
Alignment:
| Q |
145 |
tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaacttcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
50944323 |
tttccttggggactagacgtaggccttggtgttttaggccgaactaggataaacttcttgtgtccttttctctcatccctttatctct |
50944236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 17364907 - 17365131
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggtta--- |
97 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||||||||| |||||||||||| |||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
17364907 |
tcccaaggtttaaagaaaggtgatatctcttaggtttagagactcttctacaaatgattgttttgtttggagagtgctcg-ttatttgtaaaggttacta |
17365005 |
T |
|
| Q |
98 |
-ctagcttatcccgtttaaaagttaggttagtgaaaatctcaaggg-gctttccttgggaactagacgtaggccttggtgttttaggccgaactaggata |
195 |
Q |
| |
|
||||||||| ||||||| | | | |||||||||||| |||| ||||||| |||||||||| ||| ||||| ||||||||| |||||||||||| |
|
|
| T |
17365006 |
gctagcttatgttaattaaaagcttgatcagtgaaaatctcgagggtattttccttaggaactagac-tagaccttgttgttttaggtcgaactaggata |
17365104 |
T |
|
| Q |
196 |
aacttcttgtgtcattttctctcagccctt |
225 |
Q |
| |
|
|||| ||||||| |||||||||| ||||| |
|
|
| T |
17365105 |
aact--ttgtgtc-ttttctctcacccctt |
17365131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0882 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0882
Description:
Target: scaffold0882; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 358 - 129
Alignment:
| Q |
4 |
caaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttactagct |
103 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| |
|
|
| T |
358 |
caaggtttcaagagatgtgatatctcttgggtttagaagctcttctacaaaggattgttttgtttgaagagtgcttgtttatttgtaaaggttactggct |
259 |
T |
|
| Q |
104 |
tatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaacttct |
202 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
258 |
tatcccgtttaaaagctaggttaatgaaaatctcaaggggcttttccttggggactagacgtaggccttggtgttttaggccgaactaggataaacttct |
159 |
T |
|
| Q |
203 |
tgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
|
|
| T |
158 |
tgtgtcattttctctcatccctttatctct |
129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0766 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0766
Description:
Target: scaffold0766; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 3045 - 3274
Alignment:
| Q |
4 |
caaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttactagct |
103 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| |
|
|
| T |
3045 |
caaggtttcaagagatgtgatatctcttgggtttagaagctcttctacaaaggattgttttgtttgaagagtgcttgtttatttgtaaaggttactggct |
3144 |
T |
|
| Q |
104 |
tatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaacttct |
202 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3145 |
tatcccgtttaaaagctaggttaatgaaaatctcaaggggcttttccttggggactagacgtaggccttggtgttttaggccgaactaggataaacttct |
3244 |
T |
|
| Q |
203 |
tgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
|
|
| T |
3245 |
tgtgtcattttctctcatccctttatctct |
3274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 40666123 - 40665888
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
40666123 |
tcccaaggtttcaagagaggtgatatctcttgagtttagaggctcttctacaaatgattgttttgtttgaagagtgttcgcttatttgtaaaggttatta |
40666024 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40666023 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggcttttccttggggactagacgtaggccttgatgttttaggccgaactaggataaact |
40665924 |
T |
|
| Q |
200 |
tcttgtgtc---attttctctcagccctttatctct |
232 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| |
|
|
| T |
40665923 |
tcttgtgtcattattttctctcatccctttatctct |
40665888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 14404763 - 14404532
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
14404763 |
tcccaaggtttcaagagaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttggagagtgctcgctatcttgtaaaggttacta |
14404664 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14404663 |
gcttatcccgtttaaaagctaggttagtgaaaatctcaagggacttttccttggggactagacgtaggccttggtgttttaggccgaattaggataaact |
14404564 |
T |
|
| Q |
200 |
tcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| |
|
|
| T |
14404563 |
tcttgtgtcgttttctctca-tcctttatctct |
14404532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 25685832 - 25686031
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
||||||| ||||||| |||||||||||||||| |||||||||| ||||| ||||||| ||| ||||| || ||||||||| ||||||||||||||| |
|
|
| T |
25685832 |
tcccaagatttcaagagaggtgatatctcttggatttagaggcttttctataaaggataatttcgtttggagtgtgctcgctatcttgtaaaggttacta |
25685931 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctc-aaggggctttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
| |||||| |||||||| | || ||||| ||||||| | || |||| || |||||||| |||| || ||||||||| ||| ||||||||||||||| |
|
|
| T |
25685932 |
gattatcctgtttaaaatcttggatagtg-aaatctcgataggtttttctttaagaactagatgtagaccatggtgttttgggcagaactaggataaact |
25686030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 9155 - 9387
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
||||||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9155 |
tcccaaggttttaagagaggcgatatcttttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
9254 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9255 |
gcttatcccgattaaaagctaggttaatgaaaatctcaaggggcttttccttggagactagacgtaggccttggtgttttaggccgaactaggataaact |
9354 |
T |
|
| Q |
200 |
tcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| |
|
|
| T |
9355 |
tcttgtgtccttttctctcatccctttatctct |
9387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 37439777 - 37439998
Alignment:
| Q |
9 |
tttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttactagcttatcc |
108 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37439777 |
tttcaagagaggtgatatctcttgggtttagagactcttctacaaaggattattttgtttgaagagtgctcgcttatttgtaaaggttactagcttatcc |
37439876 |
T |
|
| Q |
109 |
cgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaacttcttgtgt |
207 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37439877 |
tgtttaaaagctaggttagtgaaaatctcaagggtcttttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaacttcttgtgt |
37439976 |
T |
|
| Q |
208 |
cattttctctcagccctttatc |
229 |
Q |
| |
|
| |||||||||| |||||||| |
|
|
| T |
37439977 |
ccttttctctcattcctttatc |
37439998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 54001521 - 54001345
Alignment:
| Q |
20 |
gtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttactagcttatcccgtttaaaagt |
119 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| |||||||||||||| ||| |||||| ||||||| |||||||| |||||||||| ||||||||| |
|
|
| T |
54001521 |
gtgatatctcttggttttagaaagtcttctacaaatgattgttttgtttggagaatgctcg-ttatttggaaaggttattagcttatcctatttaaaagt |
54001423 |
T |
|
| Q |
120 |
taggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaa |
197 |
Q |
| |
|
| | | ||||||||| ||||||| |||||||| | | |||||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
54001422 |
ttgatccttgaaaatcttaaggggcttttccttgaggattagacgtaag-cttggtgttttaggttgaactaggataaa |
54001345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 89301 - 89093
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
89301 |
tcccaaggtttcaagagaggtgatatctcttgggtttagaggctcttctacaaaggatcgttttgtttggagagtgctcgctatcttgtaaaggttacta |
89202 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
89201 |
gcttatcccgtttaaaagctaggttagtgaaaatctcaaggggcttttccttggggactagacgtaggccttggtgttttaggccgaactaggataaact |
89102 |
T |
|
| Q |
200 |
tcttgtgtc |
208 |
Q |
| |
|
||||||||| |
|
|
| T |
89101 |
tcttgtgtc |
89093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 12352487 - 12352715
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
12352487 |
tcccaaagtttcaagagaggtgatatctcttgggtttagagactcttc---aaaggattgttttgtttgaagagtgctcgcttatttgtaatg-ttacta |
12352582 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggcttt-ccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12352583 |
gcttatcccgtttaaaagctaggttagtgaaaatctcaagggacttttccttggggactagacgtaggccttggtgttttaggccgaactaggataaact |
12352682 |
T |
|
| Q |
200 |
tcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| |
|
|
| T |
12352683 |
tcttgtgtctttttctctcatccctttatctct |
12352715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 18677523 - 18677755
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
18677523 |
tcccaaagtttcaagagaggtgatatctcttgggtttagagactcttctacaaaggtttgttttgtttgaagagtgctcgtttatttgtaaatattacta |
18677622 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| ||| |||||||||| |
|
|
| T |
18677623 |
gcttatcccgtttaaaagctaggttagtgaaaatctcaaggggcttttccttggggactagacgtaggccgtggtgttttaggctgaattaggataaaca |
18677722 |
T |
|
| Q |
200 |
tcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
||||| |||| ||||||||| || ||||||||| |
|
|
| T |
18677723 |
tcttgcgtcagtttctctcatccatttatctct |
18677755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 14859159 - 14859362
Alignment:
| Q |
8 |
gtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttactagcttatc |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||| ||| || ||||||||||||||||||||||| ||||||| |||||||||| |||| |
|
|
| T |
14859159 |
gtttcaagagaggtgatatctcttgggtttagagactcatcttca-----ttgttttgtttgaagagtgctcgtttatttgcaaaggttact----tatc |
14859249 |
T |
|
| Q |
108 |
ccgtttaaaagttaggttagtgaaaatctcaaggggcttt-ccttgggaactagacgtaggccttggtgttttaggccgaactaggataaacttcttgtg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
14859250 |
ccgtttaaaagttaggttagtgaaaatctcaagaggcttttccttggggactagacgtaggtcttggtgttttaggccaaactaagataaacttcttgtg |
14859349 |
T |
|
| Q |
207 |
tcattttctctca |
219 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14859350 |
tcattttctctca |
14859362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 24170388 - 24170586
Alignment:
| Q |
5 |
aaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttac--tagc |
102 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||| ||| ||||||| ||||||| ||||||||| ||||||| ||| ||||||||||||| ||| |
|
|
| T |
24170388 |
aaggtttcaaaagaggtgatatatcttgggtttaaaggttcttctataaaggataattttgtttggggagtgctagctatcttgtaaaggttactatagt |
24170487 |
T |
|
| Q |
103 |
ttatcccgtttaaaagttaggttagtgaaaatctcaaggggcttt--ccttgggaactagacgtaggccttggtgttttaggccgaactaggataaactt |
200 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||| ||| | || || |||||||||| ||| ||||||||| || ||||||||| ||||||| |
|
|
| T |
24170488 |
ttatcttgtttaaaagtttggttagtgaaaatctcaaggggtttttcctttagggactagacgta-gccatggtgttttgggtcgaactagggtaaactt |
24170586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1744 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: scaffold1744
Description:
Target: scaffold1744; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 410 - 175
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttattt-gtaaaggttact |
99 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||| |||| |||||||||||| |
|
|
| T |
410 |
tcccaaagtttcaagagaggtgatatctcttgagtttagaggctcttctacaaagggtaattttgtttggagagtgctcgctaattttgtaaaggttact |
311 |
T |
|
| Q |
100 |
agcttatcccgtttaaaa-gttaggttagtgaaaatctcaaggggcttt-ccttgggaactagacgtaggccttggtgttttaggccgaactaggataaa |
197 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
310 |
agcttatcccgtttaaaaagctaagttagtgaaaatctcaaggggcttttccttggggactagacgtaggccttggtgttttaggccgaactaggataaa |
211 |
T |
|
| Q |
198 |
cttcttgtgtcattt-tctctcagccctttatctct |
232 |
Q |
| |
|
||||||||||| ||| ||||||| ||||| |||||| |
|
|
| T |
210 |
cttcttgtgtcctttctctctcatcccttaatctct |
175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 8827145 - 8827373
Alignment:
| Q |
3 |
ccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttactagc |
102 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||||| ||| |||||| | ||||||||| |||||||| |
|
|
| T |
8827145 |
ccaagatttcaagagaggtgatatctcttgggtttataggctcttctacaaaagatatttttgtttggagaatgctcgtat-tttgtaaagtttactagc |
8827243 |
T |
|
| Q |
103 |
ttatcccgtttaaaagttaggttagtgaaaatctcaaggggctttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaacttct |
202 |
Q |
| |
|
|| ||| |||||||| | || |||||||||||||||||| |||| ||||| ||||||| |||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
8827244 |
ttctcctatttaaaagcttggctagtgaaaatctcaagggtttttctttggggactagacataggccttggtgttttgggccgaactaggataaaattct |
8827343 |
T |
|
| Q |
203 |
tgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
|||||| |||||||||| || ||||||||| |
|
|
| T |
8827344 |
tgtgtctttttctctcatccatttatctct |
8827373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 15890459 - 15890686
Alignment:
| Q |
1 |
tcccaaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttacta |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||| ||||| ||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
15890459 |
tcccaaggtttcaagagaggtgatatctcttggttttagagactcttttacaaaggactgttttgtttggagagtgctcg-ttatttgtaaaggttacta |
15890557 |
T |
|
| Q |
101 |
gcttatcccgtttaaaagttaggttagtgaaaatctcaaggggc-tttccttgggaactagacgtaggccttggtgttttaggccgaactaggataaact |
199 |
Q |
| |
|
|||||||| ||||||| | | ||||||||||||||||| | |||||||||| |||||| || |||||| |||||||||||||||||| ||||||| |
|
|
| T |
15890558 |
gcttatcctaattaaaagcttgagcagtgaaaatctcaagggacttttccttgggggctagac-taagccttgttgttttaggccgaactagtataaact |
15890656 |
T |
|
| Q |
200 |
tcttgtgtcattttctctcagccctttatctct |
232 |
Q |
| |
|
|| ||||| |||||||| | |||||||||||| |
|
|
| T |
15890657 |
tc--gtgtc-ttttctcttatccctttatctct |
15890686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 46467713 - 46467849
Alignment:
| Q |
4 |
caaggtttcaaggtaggtgatatctcttgggtttagaggctcttctacaaaggattgttttgtttgaagagtgctcgcttatttgtaaaggttactagct |
103 |
Q |
| |
|
|||||||| ||| |||||||||||||| | ||||||| || | |||||||| ||||||||||||| ||||||||| |||||| ||||||||||||| | |
|
|
| T |
46467713 |
caaggttttaagagaggtgatatctcttagttttagagactatcctacaaagcattgttttgtttggagagtgctca-ttatttataaaggttactagtt |
46467811 |
T |
|
| Q |
104 |
tatcccgtttaaaagttaggttagtgaaaatctcaagg |
141 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||| |||| |
|
|
| T |
46467812 |
tatcctgtttaaaagtttggttagtgaaaatcttaagg |
46467849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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