View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9566_low_19 (Length: 229)
Name: NF9566_low_19
Description: NF9566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9566_low_19 |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold0047 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: scaffold0004 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 354251 - 354029
Alignment:
| Q |
7 |
cgtgggacaattactaaagttttcatttgcatgtaatgactttgctatatttgtctcaacgtctaaatttgttttaaatggtcaaacagctattttctct |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
354251 |
cgtgggacaattactaaagttttcatttgcatgtaatgactttcctatatttgtctcaacgtctaattttgttttaaatggtcaaacggctattttctct |
354152 |
T |
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| Q |
107 |
ccatgcatctcattcttcattaagtataaagaggatgcatcggtgtacttgaaaaactacaccttgacatagaaaatatttgtcctactctttctcactc |
206 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
354151 |
ccatgcatctcattcttcattaaatataaaaaggatgcatcggtgtacttgaaaaactacaccttgacatagaaaatatttgtcatactctttctcactc |
354052 |
T |
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| Q |
207 |
tcattattcatacacttgctaat |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
354051 |
tcattattcatacacttgctaat |
354029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 8803 - 9025
Alignment:
| Q |
7 |
cgtgggacaattactaaagttttcatttgcatgtaatgactttgctatatttgtctcaacgtctaaatttgttttaaatggtcaaacagctattttctct |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8803 |
cgtgggacaattactaaagttttcatttgcatgtaatgactttgctatatttgtctcaacgtctaaatttgttttaaatggtcaaacggctattttctct |
8902 |
T |
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| Q |
107 |
ccatgcatctcattcttcattaagtataaagaggatgcatcggtgtacttgaaaaactacaccttgacatagaaaatatttgtcctactctttctcactc |
206 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |
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| T |
8903 |
gaatgcatctcattcttcattaagtataaaaaggatgcatcggtgtacttgaaaaactacaccttaacatagaaaatacttgtcatactctttctcactc |
9002 |
T |
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| Q |
207 |
tcattattcatacacttgctaat |
229 |
Q |
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| T |
9003 |
tcattattcatacacttgctaat |
9025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 17364718 - 17364783
Alignment:
| Q |
164 |
tacaccttgacatagaaaatatttgtcctactctttctcactctcattattcatacacttgctaat |
229 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| |
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| T |
17364718 |
tacaccttgacatagaaaatatttgtcatactctttttcactctcattatttctacacttgctaat |
17364783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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