View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9566_low_2 (Length: 332)
Name: NF9566_low_2
Description: NF9566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9566_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 48983013 - 48983320
Alignment:
| Q |
9 |
tggtgtttgagtggtttgataagaaagtaacaaatgttcttttattttcaatatatcaaattggctatttatttattaaaatggtgtgacacaagtataa |
108 |
Q |
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| T |
48983013 |
tggtgtttgagtggtttgatcagaaagtaacaaattttcttttattttcaatatatcaaattggctatttatttattaaaatggtgtgacacaagtataa |
48983112 |
T |
|
| Q |
109 |
atatttgtgtctcttgacaatttggtaggagatttgatatctggttggtatacacaaataaatgttggtacaggtgaattccttgactggatctctatta |
208 |
Q |
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| T |
48983113 |
atatttgtgtctcttgacaatttggtaggagatttgatatctggttggtatacacaaataaatgttggtacaggtgaattccttgactggatctctatta |
48983212 |
T |
|
| Q |
209 |
cctcgaggaaaatccctctcttaaaataaacattggccagattcactagctagaatttttcatcgcttgagccactagagagaatccattaagcaggtga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48983213 |
cctcgaggaaaatccctctcttaaaataaacattggccagattcactagctagaatttttcatcacttgagccactagagagaatccattaagcaggtga |
48983312 |
T |
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| Q |
309 |
gctatttg |
316 |
Q |
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|||||||| |
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| T |
48983313 |
gctatttg |
48983320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 3114229 - 3114339
Alignment:
| Q |
9 |
tggtgtttgagtggtttgataagaaagtaacaaatgttcttttattttcaatatatcaaattggctatttatttattaaaatggtgtgacacaagtataa |
108 |
Q |
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||||||||||||||||| || | ||||||| ||||||||||||| ||| ||| | |||||||| ||| || |||||||||||||||||||||||||||| |
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| T |
3114229 |
tggtgtttgagtggtttcatcataaagtaataaatgttcttttagtttgaattt--caaattggttatctagttattaaaatggtgtgacacaagtataa |
3114326 |
T |
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| Q |
109 |
atatttgtgtctc |
121 |
Q |
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| T |
3114327 |
atatttgagtctc |
3114339 |
T |
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