View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9566_low_23 (Length: 226)

Name: NF9566_low_23
Description: NF9566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9566_low_23
NF9566_low_23
[»] chr3 (2 HSPs)
chr3 (17-208)||(35929894-35930098)
chr3 (137-197)||(14958535-14958595)
[»] chr6 (2 HSPs)
chr6 (36-197)||(33899797-33899972)
chr6 (18-47)||(33899982-33900011)
[»] chr4 (1 HSPs)
chr4 (17-123)||(56242239-56242346)
[»] chr8 (6 HSPs)
chr8 (149-208)||(26124889-26124948)
chr8 (135-208)||(30086319-30086393)
chr8 (36-135)||(26124763-26124863)
chr8 (176-208)||(40742992-40743024)
chr8 (73-134)||(30086407-30086468)
chr8 (73-137)||(40743074-40743138)
[»] chr2 (1 HSPs)
chr2 (135-214)||(2212109-2212189)
[»] chr1 (1 HSPs)
chr1 (135-214)||(9028259-9028339)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 35929894 - 35930098
Alignment:
Q  17 agtatctgtttggttgagcgtttgtgctctcaaagcgggttggttttttcccgtggtgtttggataaaatcaaaagcaattgtgaaaaagcaatttcaca 116  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35929894 agtatctgtttggttgagcgtttgtgctctcaaagtgggttggttttttccagtggtgtttggataaaatcaaaagcgattgtgaaaaagcaatttcaca 35929993  T
Q  117 tccaaaatgtgggttaac-------------ttgtggcttctgcggcaactaaaagcaattctaaagtttgctttttgttaagaaatatatttttcataa 203  Q
    |||||||| |||||||||             || | |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||    
T  35929994 tccaaaatatgggttaactggaagccacaaattttagcttctgcggcaactaaaagcaattctggagtttgctttttgttaagaaatatattttccataa 35930093  T
Q  204 atacc 208  Q
    |||||    
T  35930094 atacc 35930098  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 14958535 - 14958595
Alignment:
Q  137 gtggcttctgcggcaactaaaagcaattctaaagtttgctttttgttaagaaatatatttt 197  Q
    |||||||||||| ||||| ||| ||||| |  |||||| ||||||||||||||||||||||    
T  14958535 gtggcttctgcgacaactcaaatcaattttggagtttgatttttgttaagaaatatatttt 14958595  T

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Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 33899972 - 33899797
Alignment:
Q  36 gtttgtgctctcaaa-gcgggttggttttttcccgtggtgtttggataaaatcaaaagcaattgtgaaaaagcaatttcacatccaaaatgtgggttaac 134  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  33899972 gtttgtgctctcaaacgtgggttggttttttccagtggtgtttggataaaatcaaaagcaattctgaaaaagcaatttcacattcaaaacgtgggttaac 33899873  T
Q  135 -------------ttgtggcttctgcggcaactaaaagcaattctaaagtttgctttttgttaagaaatatatttt 197  Q
                 |||| ||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||    
T  33899872 tggaagccacaaattgtagcttctgcggcaactaaaagcaattttggagtttgctttttgttaagaaatatatttt 33899797  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 33900011 - 33899982
Alignment:
Q  18 gtatctgtttggttgagcgtttgtgctctc 47  Q
    ||||||||||||||||||||||||||||||    
T  33900011 gtatctgtttggttgagcgtttgtgctctc 33899982  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 56242346 - 56242239
Alignment:
Q  17 agtatctgtttggttgagcgtttgtgctctcaaa-gcgggttggttttttcccgtggtgtttggataaaatcaaaagcaattgtgaaaaagcaatttcac 115  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |  | |||||||||||||||||||||||||| ||| |||||||||||||    
T  56242346 agtatctgtttggttgagcgtttgtgctctcaaacgcgggttggtttttttcacttgtgtttggataaaatcaaaagcaattatgagaaagcaatttcac 56242247  T
Q  116 atccaaaa 123  Q
    ||||||||    
T  56242246 atccaaaa 56242239  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 26124889 - 26124948
Alignment:
Q  149 gcaactaaaagcaattctaaagtttgctttttgttaagaaatatatttttcataaatacc 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  26124889 gcaactaaaagcaattctagagtttgctttttgttaagaaatatattttccataaatacc 26124948  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 30086393 - 30086319
Alignment:
Q  135 ttgtggcttctgcggcaactaaaagcaattctaaagtttgcttttt-gttaagaaatatatttttcataaatacc 208  Q
    |||| |||||||| |||||||||||||||| |  |||||| ||||| ||||||||||||||||||||||||||||    
T  30086393 ttgtagcttctgctgcaactaaaagcaattttggagtttgtttttttgttaagaaatatatttttcataaatacc 30086319  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 26124763 - 26124863
Alignment:
Q  36 gtttgtgctctcaaa-gcgggttggttttttcccgtggtgtttggataaaatcaaaagcaattgtgaaaaagcaatttcacatccaaaatgtgggttaac 134  Q
    |||| |||||||||| | ||||||||||||| | || |||||| |||||||| |||||||||| | |||||| ||||| |||| ||||| ||||||||||    
T  26124763 gtttatgctctcaaatgtgggttggtttttttcagtagtgtttagataaaattaaaagcaattttaaaaaagtaattttacattcaaaacgtgggttaac 26124862  T
Q  135 t 135  Q
    |    
T  26124863 t 26124863  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 40743024 - 40742992
Alignment:
Q  176 tttttgttaagaaatatatttttcataaatacc 208  Q
    |||||||||||||||||||||||||||||||||    
T  40743024 tttttgttaagaaatatatttttcataaatacc 40742992  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 30086468 - 30086407
Alignment:
Q  73 tgtttggataaaatcaaaagcaattgtgaaaaagcaatttcacatccaaaatgtgggttaac 134  Q
    |||||||||| |||||||||||||| |||||||| ||||| ||   ||||| ||||||||||    
T  30086468 tgtttggatacaatcaaaagcaattttgaaaaagtaattttacggtcaaaacgtgggttaac 30086407  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 40743138 - 40743074
Alignment:
Q  73 tgtttggataaaatcaaaagcaattgtgaaaaagcaatttcacatccaaaatgtgggttaacttg 137  Q
    |||||||||| ||||||||||||||  |||||| |||||| |||  ||||| ||||||| |||||    
T  40743138 tgtttggatacaatcaaaagcaatttcgaaaaaacaattttacagtcaaaacgtgggtttacttg 40743074  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 2212109 - 2212189
Alignment:
Q  135 ttgtggcttctgcggcaact-aaaagcaattctaaagtttgctttttgttaagaaatatatttttcataaatacctatgct 214  Q
    |||| ||||||||||||||| |||||||||| |  | ||||||||||||||| ||||||||||||||||| |||| |||||    
T  2212109 ttgtagcttctgcggcaactcaaaagcaattatggaatttgctttttgttaaaaaatatatttttcataattacccatgct 2212189  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 214
Target Start/End: Complemental strand, 9028339 - 9028259
Alignment:
Q  135 ttgtggcttctgcggcaact-aaaagcaattctaaagtttgctttttgttaagaaatatatttttcataaatacctatgct 214  Q
    |||| |||| ||||| |||| ||||||||||||  | ||||| ||||||||| ||||||||||||||||| |||| |||||    
T  9028339 ttgtagcttttgcggaaactcaaaagcaattctggaatttgcattttgttaaaaaatatatttttcataattacccatgct 9028259  T

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