View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9566_low_26 (Length: 211)
Name: NF9566_low_26
Description: NF9566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9566_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 1840938 - 1840757
Alignment:
| Q |
9 |
gaagcaaaggtcattggaaaggaagtgcttattgaaatccattgtgagaaacaaaatggaattgaactcaaattattgaaccatattgaaaatcttcaac |
108 |
Q |
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| T |
1840938 |
gaagcaaaagtcattggaaaggaagtgcttattgaaatccattgtgagaaacaaaatggaattgaactcaaattatttaaccatattgaaaatcttcaac |
1840839 |
T |
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| Q |
109 |
tctttgtcactggtagcagtgtcttgccttttgggaaatctgctatttccatcactattattgctcaggtatattagagtaa |
190 |
Q |
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| T |
1840838 |
tctttgtcactggtagcagtgtcttgccttttgggaaatctgctatttccatcactattattgctcaggtatattagagtaa |
1840757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 1820683 - 1820513
Alignment:
| Q |
9 |
gaagcaaaggtcattggaaaggaagtgcttattgaaatccattgtgagaaacaaaatggaattgaactcaaattattgaaccatattgaaaatcttcaac |
108 |
Q |
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| T |
1820683 |
gaagcaagagtcattggaaaggaagtgcttattgaaatccattgtgagaaacaaaatggaattgagctcaaattacttaaccacattgaaaatcttcaac |
1820584 |
T |
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| Q |
109 |
tctttgtcactggtagcagtgtcttgccttttgggaaatctgctatttccatcactattattgctcaggta |
179 |
Q |
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| T |
1820583 |
tctttgtcactggtagcagtgtcttgccttttgggaaatctgctatttccatcactattattgctcgggta |
1820513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 45105844 - 45105993
Alignment:
| Q |
30 |
gaagtgcttattgaaatccattgtgagaaacaaaatggaattgaactcaaattattgaaccatattgaaaatcttcaactctttgtcactggtagcagtg |
129 |
Q |
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| T |
45105844 |
gaagtactcattgagatccattgtgagaaggaaaatggcattgagatcaaaatattgaatttgcttgaaaatcttcatcttattgtcactgccagcagtg |
45105943 |
T |
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| Q |
130 |
tcttgccttttgggaaatctgctatttccatcactattattgctcaggta |
179 |
Q |
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| T |
45105944 |
tatttccttttgggaattcaactcttggcttcactattgttgctcaggta |
45105993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 45132197 - 45132245
Alignment:
| Q |
96 |
gaaaatcttcaactctttgtcactggtagcagtgtcttgccttttggga |
144 |
Q |
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| T |
45132197 |
gaaaatcttgatctctttgtcactgctagcagtgtattggcttttggga |
45132245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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