View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9566_low_4 (Length: 315)

Name: NF9566_low_4
Description: NF9566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9566_low_4
NF9566_low_4
[»] chr6 (4 HSPs)
chr6 (14-179)||(6216217-6216377)
chr6 (200-266)||(29409252-29409318)
chr6 (206-266)||(10826131-10826191)
chr6 (218-266)||(17829999-17830047)
[»] chr1 (7 HSPs)
chr1 (123-181)||(48973865-48973921)
chr1 (200-266)||(48510966-48511032)
chr1 (201-264)||(13056056-13056119)
chr1 (196-266)||(15884281-15884351)
chr1 (128-173)||(25530249-25530294)
chr1 (218-266)||(11561898-11561946)
chr1 (218-266)||(12468288-12468336)
[»] chr5 (6 HSPs)
chr5 (123-180)||(21042163-21042218)
chr5 (214-268)||(16158461-16158515)
chr5 (130-181)||(12564742-12564791)
chr5 (212-266)||(13253081-13253135)
chr5 (200-266)||(40495356-40495422)
chr5 (153-181)||(16143494-16143522)
[»] scaffold0369 (1 HSPs)
scaffold0369 (200-266)||(8483-8549)
[»] chr7 (6 HSPs)
chr7 (200-266)||(44967387-44967453)
chr7 (218-266)||(37639503-37639551)
chr7 (89-172)||(24904921-24905004)
chr7 (200-266)||(48459765-48459831)
chr7 (123-179)||(27855096-27855150)
chr7 (218-266)||(10371946-10371994)
[»] chr4 (11 HSPs)
chr4 (200-266)||(6138621-6138687)
chr4 (123-179)||(54870639-54870693)
chr4 (200-266)||(16566324-16566390)
chr4 (200-266)||(28987038-28987103)
chr4 (200-266)||(54153064-54153129)
chr4 (148-181)||(44381546-44381579)
chr4 (153-181)||(2822674-2822702)
chr4 (218-266)||(13167562-13167610)
chr4 (153-181)||(26442799-26442827)
chr4 (202-266)||(33574199-33574263)
chr4 (218-266)||(48908310-48908358)
[»] chr3 (7 HSPs)
chr3 (128-181)||(53876704-53876755)
chr3 (187-266)||(23496338-23496417)
chr3 (67-181)||(3857451-3857565)
chr3 (200-266)||(42475743-42475809)
chr3 (200-266)||(50664792-50664858)
chr3 (123-179)||(6926171-6926225)
chr3 (151-179)||(19979108-19979136)
[»] chr8 (4 HSPs)
chr8 (148-181)||(39896094-39896127)
chr8 (123-179)||(7178861-7178915)
chr8 (218-266)||(3467593-3467641)
chr8 (113-173)||(43776422-43776482)
[»] chr2 (8 HSPs)
chr2 (123-179)||(29691310-29691366)
chr2 (200-266)||(1945038-1945104)
chr2 (212-266)||(7472673-7472727)
chr2 (212-266)||(31562686-31562740)
chr2 (149-179)||(36590993-36591023)
chr2 (200-266)||(41580709-41580775)
chr2 (218-266)||(2213708-2213756)
chr2 (202-266)||(42515975-42516038)
[»] scaffold0007 (1 HSPs)
scaffold0007 (212-263)||(29127-29178)
[»] scaffold0983 (1 HSPs)
scaffold0983 (218-266)||(2269-2317)
[»] scaffold0394 (1 HSPs)
scaffold0394 (218-266)||(5831-5879)


Alignment Details
Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 6216217 - 6216377
Alignment:
Q  14 ccatttgtgattctaggcatcggctaatagtaccttgtttgtcttgnnnnnnnggtggtgtgtaattattgtgtagacattatttgtacattgatattac 113  Q
    |||||||||||||||||||| ||||||||   |||||||| |||||       |||||||||||||||||||||||||| |||||||| |||| ||||||    
T  6216217 ccatttgtgattctaggcattggctaata---ccttgtttttcttgtttta--ggtggtgtgtaattattgtgtagacactatttgtagattggtattac 6216311  T
Q  114 ttcctcattacacgttgtgctaggaagaccatttaggtgtgttaatatatttcattttagtttctt 179  Q
    ||||| | || || ||||  ||||||||||||||   ||||||||||||||||||||||| |||||    
T  6216312 ttccttagtataccttgtattaggaagaccatttgattgtgttaatatatttcattttagcttctt 6216377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 29409318 - 29409252
Alignment:
Q  200 tgtattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||| ||||||  ||| ||||||||| ||| |||||||||| | ||||||||| ||||||||||||    
T  29409318 tgtatccaaacataaatcaattcacatcaaactcacttttaatcaaaatcaattctttcaaactcaa 29409252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 10826131 - 10826191
Alignment:
Q  206 caaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||||| ||| |||||| ||| || |||||||||||| ||||||||| | ||||||||||    
T  10826131 caaacaaaaatcaattcaaattcaactcacttttaaccaaaatcaattctctcaaactcaa 10826191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 17830047 - 17829999
Alignment:
Q  218 aattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    |||||||||| || |||||||||||| ||||||||| | ||||||||||    
T  17830047 aattcacattcaactcacttttaaccaaaatcaattctctcaaactcaa 17829999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 48973865 - 48973921
Alignment:
Q  123 acacgttgtgctaggaagaccatttaggtgtgttaatatatttcattttagtttcttca 181  Q
    |||| ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||    
T  48973865 acaccttgtgctaggaaggcc--ttaggtgtgttaatatatttcattttagtttcttca 48973921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 48510966 - 48511032
Alignment:
Q  200 tgtattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||| ||||||  ||| |||||||||| || |||||||||||| ||||||||||| ||||||||||    
T  48510966 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattatctcaaactcaa 48511032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 13056056 - 13056119
Alignment:
Q  201 gtattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactc 264  Q
    |||||||||||  ||| |||||||| | || |||||||||||| ||||||||| ||||||||||    
T  13056056 gtattcaaacataaatcaattcacactcaactcacttttaaccaaaatcaattctttcaaactc 13056119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 15884281 - 15884351
Alignment:
Q  196 ttattgtattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||||||| ||||||  ||| |||||||||  || |||||||||||| ||||||||| | ||||||||||    
T  15884281 ttattgtatccaaacataaatcaattcacatccaactcacttttaaccaaaatcaattctgtcaaactcaa 15884351  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 25530249 - 25530294
Alignment:
Q  128 ttgtgctaggaagaccatttaggtgtgttaatatatttcattttag 173  Q
    |||||||||||||||||||| | | || ||||||||||||||||||    
T  25530249 ttgtgctaggaagaccattttgatttggtaatatatttcattttag 25530294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 11561898 - 11561946
Alignment:
Q  218 aattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    |||||||||| || |||||||||||| |||| |||| ||||||||||||    
T  11561898 aattcacattcaactcacttttaaccaaaattaattctttcaaactcaa 11561946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 12468288 - 12468336
Alignment:
Q  218 aattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    |||| |||| ||| |||||||||||| ||||||||||| ||||||||||    
T  12468288 aatttacatcaaactcacttttaaccaaaatcaattatatcaaactcaa 12468336  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 21042163 - 21042218
Alignment:
Q  123 acacgttgtgctaggaagaccatttaggtgtgttaatatatttcattttagtttcttc 180  Q
    |||| ||||||||||||| ||  |||||||||||||||||||||||||||||||||||    
T  21042163 acaccttgtgctaggaaggcc--ttaggtgtgttaatatatttcattttagtttcttc 21042218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 16158515 - 16158461
Alignment:
Q  214 aattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaaat 268  Q
    ||||||||||||| ||| |||||||||| | ||||||||| ||||||||||||||    
T  16158515 aattaattcacatcaaactcacttttaatcaaaatcaattctttcaaactcaaat 16158461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 12564791 - 12564742
Alignment:
Q  130 gtgctaggaagaccatttaggtgtgttaatatatttcattttagtttcttca 181  Q
    |||||||||||||||||  | |||||||||||||||||||||||| ||||||    
T  12564791 gtgctaggaagaccatt--gttgtgttaatatatttcattttagtctcttca 12564742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 13253135 - 13253081
Alignment:
Q  212 ataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||| |||||| ||| || |||||||||||| ||||||||| ||||||||||||    
T  13253135 ataatcaattcatattcaactcacttttaaccaaaatcaattctttcaaactcaa 13253081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 40495422 - 40495356
Alignment:
Q  200 tgtattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||| ||||||  ||| |||| |||| ||| |||||||||||| ||||||||||| ||||||||||    
T  40495422 tgtatccaaacataaatcaatttacatcaaactcacttttaaccaaaatcaattatatcaaactcaa 40495356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 181
Target Start/End: Complemental strand, 16143522 - 16143494
Alignment:
Q  153 tgttaatatatttcattttagtttcttca 181  Q
    |||||||||||||||||||||||||||||    
T  16143522 tgttaatatatttcattttagtttcttca 16143494  T

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Target: scaffold0369 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 8483 - 8549
Alignment:
Q  200 tgtattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||| ||||||  ||| ||||||||| ||| |||||||||||| ||||||||||| ||||||||||    
T  8483 tgtatccaaacataaatcaattcacatcaaactcacttttaaccaaaatcaattatatcaaactcaa 8549  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 44967453 - 44967387
Alignment:
Q  200 tgtattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||||||||||  ||| |||||||||| || |||||||||||| ||||||||| | ||||||||||    
T  44967453 tgtattcaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaa 44967387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 37639503 - 37639551
Alignment:
Q  218 aattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    |||||||||| ||||||||||||||| ||||||||| | ||||||||||    
T  37639503 aattcacattcaattcacttttaaccaaaatcaattctctcaaactcaa 37639551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 24905004 - 24904921
Alignment:
Q  89 gacattatttgtacattgatattacttcctcattacacgttgtgctaggaagaccatttaggtgtgttaatatatttcatttta 172  Q
    |||||| ||||||| ||| | || |||||| |  |||| ||||||||||||| |||||| | || |||||||||||||||||||    
T  24905004 gacattgtttgtactttggtgtttcttccttagcacaccttgtgctaggaaggccatttggttgagttaatatatttcatttta 24904921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 48459765 - 48459831
Alignment:
Q  200 tgtattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||| ||||||  ||| |||||||||| || |||||||||||| ||||||||| | ||||||||||    
T  48459765 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaa 48459831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 27855096 - 27855150
Alignment:
Q  123 acacgttgtgctaggaagaccatttaggtgtgttaatatatttcattttagtttctt 179  Q
    |||| ||||||||||||||||  |||| |||| ||||||| ||||||||||||||||    
T  27855096 acaccttgtgctaggaagacc--ttagttgtggtaatataattcattttagtttctt 27855150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 10371994 - 10371946
Alignment:
Q  218 aattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    |||||||||| || |||||||||||| ||||||||| | ||||||||||    
T  10371994 aattcacattcaactcacttttaaccaaaatcaattctctcaaactcaa 10371946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 6138687 - 6138621
Alignment:
Q  200 tgtattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||| ||||||  ||| |||||||||  || |||||||||||| ||||||||||||||||||||||    
T  6138687 tgtatccaaacataaatcaattcacatccaactcacttttaaccaaaatcaattatttcaaactcaa 6138621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 54870693 - 54870639
Alignment:
Q  123 acacgttgtgctaggaagaccatttaggtgtgttaatatatttcattttagtttctt 179  Q
    |||| ||||||||||||||||  |  |||||||||||||||||||||||||||||||    
T  54870693 acaccttgtgctaggaagacc--tcgggtgtgttaatatatttcattttagtttctt 54870639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 16566324 - 16566390
Alignment:
Q  200 tgtattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||| ||||||  ||| |||||||||| || |||||||||||| ||||||||| | ||||||||||    
T  16566324 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaa 16566390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 28987038 - 28987103
Alignment:
Q  200 tgtattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    |||||||||||| |||| ||||||| | ||| |||||||||||| ||||||||| | ||||||||||    
T  28987038 tgtattcaaaca-taatcaattcacctcaaactcacttttaaccaaaatcaattctctcaaactcaa 28987103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 54153064 - 54153129
Alignment:
Q  200 tgtattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    |||||||||||| |||| |||||||||| || |||||||||||| |||||||||   ||||||||||    
T  54153064 tgtattcaaaca-taatcaattcacattcaactcacttttaaccaaaatcaattcactcaaactcaa 54153129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 181
Target Start/End: Original strand, 44381546 - 44381579
Alignment:
Q  148 aggtgtgttaatatatttcattttagtttcttca 181  Q
    ||||||||||||||||||||||||||||| ||||    
T  44381546 aggtgtgttaatatatttcattttagttttttca 44381579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 181
Target Start/End: Original strand, 2822674 - 2822702
Alignment:
Q  153 tgttaatatatttcattttagtttcttca 181  Q
    |||||||||||||||||||||||||||||    
T  2822674 tgttaatatatttcattttagtttcttca 2822702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 13167562 - 13167610
Alignment:
Q  218 aattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    |||||||||| || |||||||||||| ||||||||| | ||||||||||    
T  13167562 aattcacattcaactcacttttaaccaaaatcaattctctcaaactcaa 13167610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 181
Target Start/End: Original strand, 26442799 - 26442827
Alignment:
Q  153 tgttaatatatttcattttagtttcttca 181  Q
    |||||||||||||||||||||||||||||    
T  26442799 tgttaatatatttcattttagtttcttca 26442827  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 33574199 - 33574263
Alignment:
Q  202 tattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||||||||  ||| |||||||||| || |||||||||||| |||| |||| | ||||||||||    
T  33574199 tattcaaacataaatcaattcacattcaactcacttttaaccaaaattaattctctcaaactcaa 33574263  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 48908310 - 48908358
Alignment:
Q  218 aattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||||||| ||| |||||||||||| ||||||||| | ||||||||||    
T  48908310 aattcacatcaaactcacttttaaccaaaatcaattctctcaaactcaa 48908358  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 53876755 - 53876704
Alignment:
Q  128 ttgtgctaggaagaccatttaggtgtgttaatatatttcattttagtttcttca 181  Q
    ||||||||||||| ||  | ||||||||||||||||||||||||||||||||||    
T  53876755 ttgtgctaggaaggcc--tcaggtgtgttaatatatttcattttagtttcttca 53876704  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 23496338 - 23496417
Alignment:
Q  187 aagaattacttattgtattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    |||||| |||| | |||| ||||||  ||| |||||||||| || |||||||||||| ||||||||| | ||||||||||    
T  23496338 aagaatcacttttagtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaa 23496417  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 3857565 - 3857451
Alignment:
Q  67 ggtggtgtgtaattattgtgtagacattatttgtacattgatattacttcctcattacacgttgtgctaggaagaccatttaggtgtgttaatatatttc 166  Q
    |||||| |||||||||||| || | ||| |||| || ||||| || |||||| |  |||| | |||||| |||| ||| || | |||||||||||  |||    
T  3857565 ggtggtttgtaattattgtataaatattgtttgaactttgatgtttcttccttagcacacctagtgctacgaaggccagttggttgtgttaatattattc 3857466  T
Q  167 attttagtttcttca 181  Q
    |||||||||||||||    
T  3857465 attttagtttcttca 3857451  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 42475743 - 42475809
Alignment:
Q  200 tgtattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||||||||||| ||| |||||||||  || |||||||||| | ||||||||| | ||||||||||    
T  42475743 tgtattcaaacaaaaatcaattcacatctaactcacttttaatcaaaatcaattctctcaaactcaa 42475809  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 50664792 - 50664858
Alignment:
Q  200 tgtattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||| ||||||  ||| |||||||||| || |||||||||||| ||||||||| | ||||||||||    
T  50664792 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaa 50664858  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 6926171 - 6926225
Alignment:
Q  123 acacgttgtgctaggaagaccatttaggtgtgttaatatatttcattttagtttctt 179  Q
    |||| ||||||||||||| ||  | ||||||||||||||||||||||||| ||||||    
T  6926171 acaccttgtgctaggaaggcc--tcaggtgtgttaatatatttcattttaatttctt 6926225  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 179
Target Start/End: Complemental strand, 19979136 - 19979108
Alignment:
Q  151 tgtgttaatatatttcattttagtttctt 179  Q
    |||||||||||||||||||||||||||||    
T  19979136 tgtgttaatatatttcattttagtttctt 19979108  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 39896127 - 39896094
Alignment:
Q  148 aggtgtgttaatatatttcattttagtttcttca 181  Q
    ||||||||||||||||||||||||||||||||||    
T  39896127 aggtgtgttaatatatttcattttagtttcttca 39896094  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 7178915 - 7178861
Alignment:
Q  123 acacgttgtgctaggaagaccatttaggtgtgttaatatatttcattttagtttctt 179  Q
    |||| ||||||||||||| || ||  | |||||||||||||||||||||||||||||    
T  7178915 acaccttgtgctaggaaggccttt--gttgtgttaatatatttcattttagtttctt 7178861  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 3467593 - 3467641
Alignment:
Q  218 aattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    |||||||||| || |||||||||||| ||||||||| | ||||||||||    
T  3467593 aattcacattcaactcacttttaaccaaaatcaattctctcaaactcaa 3467641  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 43776422 - 43776482
Alignment:
Q  113 cttcctcattacacgttgtgctaggaagaccatttaggtgtgttaatatatttcattttag 173  Q
    |||||| | ||||| ||||||||||||| |||||| | |||| ||||||| ||||||||||    
T  43776422 cttccttagtacaccttgtgctaggaaggccattttgttgtggtaatataattcattttag 43776482  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 29691310 - 29691366
Alignment:
Q  123 acacgttgtgctaggaagaccatttaggtgtgttaatatatttcattttagtttctt 179  Q
    |||| ||||||||||||| |||||| | || |||||||||||||||||||| |||||    
T  29691310 acaccttgtgctaggaaggccatttggttgagttaatatatttcattttagcttctt 29691366  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 1945104 - 1945038
Alignment:
Q  200 tgtattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||| ||||||  ||| |||||||||| || |||||||||||| ||||||||| | ||||||||||    
T  1945104 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaa 1945038  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 7472727 - 7472673
Alignment:
Q  212 ataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||| ||||||||| ||| |||||||||||| ||||||||| | ||||||||||    
T  7472727 ataatcaattcacatcaaactcacttttaaccaaaatcaattctctcaaactcaa 7472673  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 31562740 - 31562686
Alignment:
Q  212 ataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||| ||||||| | |||||||||||||||| ||||||||| | ||||||||||    
T  31562740 ataatcaattcacctcaaattcacttttaaccaaaatcaattctctcaaactcaa 31562686  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 179
Target Start/End: Original strand, 36590993 - 36591023
Alignment:
Q  149 ggtgtgttaatatatttcattttagtttctt 179  Q
    |||||||||||||||||||||||||||||||    
T  36590993 ggtgtgttaatatatttcattttagtttctt 36591023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 41580775 - 41580709
Alignment:
Q  200 tgtattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||| ||||||  |||||||| |||| ||| |||||||||||| ||||||||| | ||||||||||    
T  41580775 tgtatccaaacataaattaatttacatcaaactcacttttaaccaaaatcaattctctcaaactcaa 41580709  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 2213708 - 2213756
Alignment:
Q  218 aattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||||||| ||| |||||||||||| ||||||||| | ||||||||||    
T  2213708 aattcacatcaaactcacttttaaccaaaatcaattctctcaaactcaa 2213756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 42516038 - 42515975
Alignment:
Q  202 tattcaaacaataattaattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    |||||||||| |||| ||||||||| ||| |||||||||||  ||||||||| | ||||||||||    
T  42516038 tattcaaaca-taatcaattcacatcaaactcacttttaactaaaatcaattctctcaaactcaa 42515975  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 29178 - 29127
Alignment:
Q  212 ataattaattcacattaaattcacttttaacccaaatcaattatttcaaact 263  Q
    ||||| |||||||||| || |||||||||||| ||||||||| |||||||||    
T  29178 ataatcaattcacattcaactcacttttaaccaaaatcaattctttcaaact 29127  T

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Target: scaffold0983 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 2317 - 2269
Alignment:
Q  218 aattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    ||||||| | ||| |||||||||||| ||||||||||| ||||||||||    
T  2317 aattcacctcaaactcacttttaaccaaaatcaattatgtcaaactcaa 2269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 5879 - 5831
Alignment:
Q  218 aattcacattaaattcacttttaacccaaatcaattatttcaaactcaa 266  Q
    |||||||||| || |||||||||||| ||||||||| | ||||||||||    
T  5879 aattcacattcaactcacttttaaccaaaatcaattctctcaaactcaa 5831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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