View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9566_low_7 (Length: 291)
Name: NF9566_low_7
Description: NF9566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9566_low_7 |
 | |
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| [»] chr2 (3 HSPs) |
| |
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| [»] chr5 (2 HSPs) |
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|
| [»] chr7 (1 HSPs) |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 13448554 - 13448264
Alignment:
| Q |
1 |
gtggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
13448554 |
gtggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcagtg |
13448455 |
T |
|
| Q |
101 |
gggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13448454 |
gggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctaca |
13448355 |
T |
|
| Q |
201 |
atgagaaacttataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgttgcggagagaaagaagtt |
291 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13448354 |
atgagaaactgataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgtcgcggagagaaagaagtt |
13448264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 13455025 - 13454735
Alignment:
| Q |
1 |
gtggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtg |
100 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
13455025 |
gtggttgccgaagggatttgaagagaaaaacatcgagaaaaagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcagtg |
13454926 |
T |
|
| Q |
101 |
gggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| || ||||||||||||||||||| |
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|
| T |
13454925 |
gggggatttatgacgcattgcggggggaactcaatcgtagaggctgttagcatgggagttccaatgataacgtggccagtccatggagatcaattctaca |
13454826 |
T |
|
| Q |
201 |
atgagaaacttataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgttgcggagagaaagaagtt |
291 |
Q |
| |
|
| |||||||| ||||||||| | |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
13454825 |
acgagaaactaataacacaagttcgaggaattggaattgaagtcggtgcaacagaatggtgtacaagtggtgttgcggagagagagaagtt |
13454735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 13440391 - 13440101
Alignment:
| Q |
1 |
gtggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtg |
100 |
Q |
| |
|
|||||| || |||||||| ||||||||||| || ||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13440391 |
gtggttgccaaagggattcgaagagagaaacattaggaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcggtg |
13440292 |
T |
|
| Q |
101 |
gggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13440291 |
gggggatttatgacgcattgcggggggaactcaattgtagagtctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctaca |
13440192 |
T |
|
| Q |
201 |
atgagaaacttataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgttgcggagagaaagaagtt |
291 |
Q |
| |
|
| |||||||| |||||||||| |||||||||||||| |||||||||||||| |||||||||| || |||||||||||||||| ||||||| |
|
|
| T |
13440191 |
acgagaaactggtaacacaatttcgaggaattggagtggaagtcggtgcaacggaatggtgtaagaatggtgttgcggagagagagaagtt |
13440101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 12540869 - 12540586
Alignment:
| Q |
8 |
ccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggat |
107 |
Q |
| |
|
|||||||||||||| |||||||| || || || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
12540869 |
ccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggat |
12540770 |
T |
|
| Q |
108 |
ttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctacaatgagaa |
207 |
Q |
| |
|
||||||| ||||| ||||| ||||||| |||||||||||| |||||||||||||||||||||| |||||| |||||||||||| || | ||| ||||| |
|
|
| T |
12540769 |
ttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgagaa |
12540670 |
T |
|
| Q |
208 |
acttataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgttgcggagagaaagaagtt |
291 |
Q |
| |
|
||| |||||||| |||||||||||||||| ||||| |||||||||||||||||||| | |||| || ||||||||||||||| |
|
|
| T |
12540669 |
actaataacacaggtccgaggaattggagtagaagtaggtgcaacagaatggtgtacaaatggtaatggggagagaaagaagtt |
12540586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 28385515 - 28385235
Alignment:
| Q |
11 |
aagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggattta |
110 |
Q |
| |
|
||||||||||| |||||||| || || ||||||||||| || || ||||||||||||||||||||| |||||||||| ||||||| |||||||||||| |
|
|
| T |
28385515 |
aagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggggggatttc |
28385416 |
T |
|
| Q |
111 |
tgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctacaatgagaaact |
210 |
Q |
| |
|
|||| |||||||| |||||||||| |||||||||||| | |||||||||||||||||||| ||||| ||||| |||||| ||| |||||||||| | |
|
|
| T |
28385415 |
tgacacattgcggagggaactcaattgtagaggctgttggcgcgggagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgagaaatt |
28385316 |
T |
|
| Q |
211 |
tataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgttgcggagagaaagaagtt |
291 |
Q |
| |
|
|||||| | ||||| |||||||||| ||||| |||| ||| ||||||||||| | |||| || ||||||||||||||| |
|
|
| T |
28385315 |
gataacaacagtccgaagaattggagtggaagtaggtgtaacggaatggtgtacaaatggtaatggggagagaaagaagtt |
28385235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 3417515 - 3417805
Alignment:
| Q |
1 |
gtggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtg |
100 |
Q |
| |
|
|||||| |||||||||||||| |||||||| || || ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| || |
|
|
| T |
3417515 |
gtggttgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcggta |
3417614 |
T |
|
| Q |
101 |
gggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctaca |
200 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| || ||||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||| | || |
|
|
| T |
3417615 |
gggggatttatgacacattgtggggggaactcatttgttgaggctgttggtgcaggagttccaatgataacgtggccgggtcatggagatcaattgttca |
3417714 |
T |
|
| Q |
201 |
atgagaaacttataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgtacgagtggtgttgcggagagaaagaagtt |
291 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||| || | |||| ||| ||||||||||||||| |
|
|
| T |
3417715 |
atgagaaactaataacacaagtccgaggaattggagtggaagtaggtgcaacagaatggcgtgcacatggtattggggagagaaagaagtt |
3417805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 48958338 - 48958074
Alignment:
| Q |
1 |
gtggttaccgaagggatttgaagagagaaatatcgggaagaag---ggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgca |
97 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||| || || |||||| ||||||||||||||||| ||||||||||||||| ||| |||||||| ||| |
|
|
| T |
48958338 |
gtggttgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgcc |
48958239 |
T |
|
| Q |
98 |
gtggggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattct |
197 |
Q |
| |
|
||||| | ||||||||| ||||||||| ||||||| || || ||||||||||| ||||| ||||||||||| || |||||||| |||||||| ||||||| |
|
|
| T |
48958238 |
gtgggtgcatttatgacacattgcgggtggaactccactgtggaggctgttagcgcgggggttccaatgatcacgtggccggtgcatggagaacaattct |
48958139 |
T |
|
| Q |
198 |
acaatgagaaacttataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgt |
262 |
Q |
| |
|
|||||||||| | ||||| | | ||||||||||| || || || ||||||||||| |||||| |
|
|
| T |
48958138 |
acaatgagaagttgataactaatgtgcgaggaattggggtggaggttggtgcaacagagtggtgt |
48958074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 48965520 - 48965259
Alignment:
| Q |
1 |
gtggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtg |
100 |
Q |
| |
|
||||||||| |||||||| ||||||||||| || || |||||||||||||| |||||||||||||| || || ||| ||| |||||||||| || ||| |
|
|
| T |
48965520 |
gtggttaccaaagggattcgaagagagaaacattggaaagaagggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctgtg |
48965421 |
T |
|
| Q |
101 |
gggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctaca |
200 |
Q |
| |
|
|| | |||||||| ||||| || ||||||| || || ||||||||| ||||||| ||||| ||||| |||||||| |||||||| |||||||||| |
|
|
| T |
48965420 |
ggtgcctttatgactcattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctaca |
48965321 |
T |
|
| Q |
201 |
atgagaaacttataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgt |
262 |
Q |
| |
|
| || ||||| |||||| || | ||||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
48965320 |
acgaaaaactgataacagaagtgcgagggattggagtggaagttggtgcaacagaatggtgt |
48965259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 48961487 - 48961221
Alignment:
| Q |
1 |
gtggttaccgaagggatttgaagagagaaatatcg---ggaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgca |
97 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| || | |||||||||||||||||||| ||| |||||||||||||||| ||| || ||||| | || |
|
|
| T |
48961487 |
gtggttgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcg |
48961388 |
T |
|
| Q |
98 |
gtggggggatttatgacgcattgcggggggaa--ctcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaatt |
195 |
Q |
| |
|
||||| | |||||||||||||||||| |||| ||| ||| | ||||||| |||||| || | ||||||||||||||||| || |||||||| ||||| |
|
|
| T |
48961387 |
gtgggtgtgtttatgacgcattgcgggtggaactctccaccattgaggctggtagtgcagggatcccaatgataacatggcccgtacatggagaacaatt |
48961288 |
T |
|
| Q |
196 |
ctacaatgagaaacttataacacaattccgaggaattggagttgaagtcggtgcaacagaatggtgt |
262 |
Q |
| |
|
|||||| ||||| | ||||| | | || || |||||| ||||||| |||||||||||||||||| |
|
|
| T |
48961287 |
ctacaacgagaagttgataactgatgtgcggggtattggaattgaagttggtgcaacagaatggtgt |
48961221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 48912331 - 48912539
Alignment:
| Q |
2 |
tggttaccgaagggatttgaagagagaaatatcgg---gaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcag |
98 |
Q |
| |
|
||||| || ||||| ||||||||||||| |||||| |||||||| | |||| |||| ||||||||| ||||| |||| ||| |||||||| | || | |
|
|
| T |
48912331 |
tggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttatgattctgagccacacagccg |
48912430 |
T |
|
| Q |
99 |
tggggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattcta |
198 |
Q |
| |
|
|||| | ||||||||| ||||| ||| |||| || || || ||||| |||||||| || ||||||||||| || |||||| | |||||||| || || || |
|
|
| T |
48912431 |
tgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacagtttta |
48912530 |
T |
|
| Q |
199 |
caatgagaa |
207 |
Q |
| |
|
||||||||| |
|
|
| T |
48912531 |
caatgagaa |
48912539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 207
Target Start/End: Complemental strand, 48974262 - 48974103
Alignment:
| Q |
48 |
tgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaaccgtagaggctgt |
147 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||| || |||||||||| | || | ||| |||| ||||||||| ||||||| ||||| || || || |
|
|
| T |
48974262 |
tgatcataagggggtgggccccacaagtggtgattttaggccaccctgctatcggtgcattcttgacacattgcgggtggaactccaccgtggaagccgt |
48974163 |
T |
|
| Q |
148 |
tagtgcgggagttccaatgataacatggccggttcatggagatcaattctacaatgagaa |
207 |
Q |
| |
|
|||||| || ||||||||||| || ||||| || |||| || ||||||||||| ||||| |
|
|
| T |
48974162 |
tagtgcaggggttccaatgatcacgtggccagtgcatgacgaacaattctacaacgagaa |
48974103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 2 - 204
Target Start/End: Original strand, 6497 - 6702
Alignment:
| Q |
2 |
tggttaccgaagggatttgaagagagaaatatcgg---gaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcag |
98 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| ||| ||||||||| || |
|
|
| T |
6497 |
tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctc |
6596 |
T |
|
| Q |
99 |
tggggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattcta |
198 |
Q |
| |
|
|||| | |||||||||||||| ||| |||| || || || |||||||||||||| || ||||| ||||| || |||||||| |||||||| ||||| || |
|
|
| T |
6597 |
tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcatggagaacaatttta |
6696 |
T |
|
| Q |
199 |
caatga |
204 |
Q |
| |
|
|||||| |
|
|
| T |
6697 |
caatga |
6702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 207
Target Start/End: Original strand, 10517 - 10687
Alignment:
| Q |
37 |
gaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaacc |
136 |
Q |
| |
|
||||||||||||||| |||| |||||||||||| || |||| ||| | |||||| ||| ||||| | |||||||| ||||| ||| |||| || ||| |
|
|
| T |
10517 |
gaagaagggtttgattattaagggttgggcccctcaggttatgattctaagccacactgttgtgggtgcgtttatgacacattgtgggtggaattccacc |
10616 |
T |
|
| Q |
137 |
gtagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctacaatgagaa |
207 |
Q |
| |
|
|| ||||| |||||||| || ||||||||||| || ||||| | |||||||| ||||| ||||||||||| |
|
|
| T |
10617 |
gtggaggcggttagtgcaggggttccaatgatcacgtggccaatgcatggagaacaattttacaatgagaa |
10687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 1580 - 1638
Alignment:
| Q |
140 |
gaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattcta |
198 |
Q |
| |
|
|||||||||||||| ||| |||||||||| |||||||| || ||| | ||||||||||| |
|
|
| T |
1580 |
gaggctgttagtgcaggaattccaatgatcacatggccagtacatagtgatcaattcta |
1638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 216
Target Start/End: Original strand, 12641506 - 12641684
Alignment:
| Q |
38 |
aagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaaccg |
137 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||||| | ||| || |||||| |||| ||||| | ||| ||||||||||||||| |||||| | |
|
|
| T |
12641506 |
aagaaaggttttatcattagggagtgggccccacaagtaatgattttaagccacgctgctgtgggtgcattcatgacgcattgcgggtcgaactccttgg |
12641605 |
T |
|
| Q |
138 |
tagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctacaatgagaaacttataac |
216 |
Q |
| |
|
|||||||||||||||| || |||||||||| || ||||| || || ||||| || ||||| |||||||| || ||||| |
|
|
| T |
12641606 |
tagaggctgttagtgcagggattccaatgatcacgtggccagtgcaaggagaacagttctataatgagaagctgataac |
12641684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 37 - 177
Target Start/End: Original strand, 12590196 - 12590336
Alignment:
| Q |
37 |
gaagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaacc |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||| |||||||| ||||||||| | |||||||| ||||| || |||| || | |
|
|
| T |
12590196 |
gaagaagggtttgatcattaggggttgggccccacaagtaatgattatgagccacaatgcagtgggcgcgtttatgacacattgtggatggaattccgtc |
12590295 |
T |
|
| Q |
137 |
gtagaggctgttagtgcgggagttccaatgataacatggcc |
177 |
Q |
| |
|
|| ||||| |||||||| ||| |||| ||||| |||||||| |
|
|
| T |
12590296 |
gtggaggcggttagtgctggaattccgatgatcacatggcc |
12590336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 262
Target Start/End: Original strand, 12483492 - 12483716
Alignment:
| Q |
38 |
aagaagggtttgatcattaggggttgggccccacaagttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaaccg |
137 |
Q |
| |
|
|||| |||||| ||||| ||||| ||||| ||||| || ||| |||||||||||||||||||| | ||||||||| || || || |||| || | |
|
|
| T |
12483492 |
aagatgggtttaatcatcagggggtgggcaccacaggtactgattttgagccaccctgcagtgggtgcatttatgactcactgtggatggaattctgttg |
12483591 |
T |
|
| Q |
138 |
tagaggctgttagtgcgggagttccaatgataacatggccggttcatggagatcaattctacaatgagaaacttataacacaattccgaggaattggagt |
237 |
Q |
| |
|
| || || |||||||| || |||||||||| || ||||||||||| || || || || |||||||||||||| ||||| | | ||||| ||||| || |
|
|
| T |
12483592 |
tggaagcggttagtgcagggattccaatgatcacgtggccggttcacggtgaacatttttacaatgagaaactcataactaatgtgcgagggattggtgt |
12483691 |
T |
|
| Q |
238 |
tgaagtcggtgcaacagaatggtgt |
262 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
12483692 |
ggaagtcggtgcaacagagtggtgt |
12483716 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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