View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9566_low_8 (Length: 282)
Name: NF9566_low_8
Description: NF9566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9566_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 28119367 - 28119229
Alignment:
| Q |
144 |
aattactagtcattaatgcactagcaattgggtagtgcaagtttagttacttcggaaaactagcttatttttgctcaatctagatacaaacactactaaa |
243 |
Q |
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| T |
28119367 |
aattactagtcataaatgcactagcaattgggtagtgcaagtttagttacttcggaaaactagcttatttttgctcaatctagatacaaacactactaaa |
28119268 |
T |
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| Q |
244 |
tctttgtacacataagaccaacaaaaagaaattaataga |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
28119267 |
tctttgtacacataagaccaacaaaaagaaattaataga |
28119229 |
T |
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