View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9567_high_14 (Length: 228)

Name: NF9567_high_14
Description: NF9567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9567_high_14
NF9567_high_14
[»] chr8 (11 HSPs)
chr8 (1-217)||(3391203-3391419)
chr8 (1-217)||(3315176-3315392)
chr8 (1-216)||(3364487-3364702)
chr8 (1-170)||(13787542-13787711)
chr8 (37-217)||(3429556-3429740)
chr8 (1-59)||(3407148-3407206)
chr8 (112-217)||(3262300-3262405)
chr8 (103-216)||(3407006-3407119)
chr8 (134-218)||(7164327-7164411)
chr8 (112-185)||(3286217-3286290)
chr8 (137-217)||(3324670-3324750)
[»] chr5 (1 HSPs)
chr5 (1-216)||(15803229-15803444)
[»] chr3 (2 HSPs)
chr3 (67-217)||(6905497-6905647)
chr3 (111-216)||(32410763-32410868)
[»] chr2 (1 HSPs)
chr2 (4-217)||(14766611-14766824)
[»] scaffold0468 (1 HSPs)
scaffold0468 (117-217)||(5837-5937)
[»] chr7 (1 HSPs)
chr7 (66-217)||(8371314-8371465)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 3391419 - 3391203
Alignment:
Q  1 tcaaaacttagaagtgtttcggtacaatgtgactcggagattcaactgaaacaagaattccgaaaatttcttgatgatctatatggtgcaggtcttactg 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||| ||| ||||||||||    
T  3391419 tcaaaacttagaagtgtttcggtacaatgtgactcagagattcaactgaaacaagaattcagaagatttcttgatgatctatatgatgccggtcttactg 3391320  T
Q  101 aattgggaatgtcacatgcatcacacatttcggatctttccttgagatcgcttttgattggaatgggaaattgcaacatagtcatcaatactctggggaa 200  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  3391319 aattgggaatatcacatgcatcacacatttcggatcattccttgagatctcttttgattggaatgggaaattgccacatagtcatcaatattcttgggaa 3391220  T
Q  201 gagcttatcacaggttc 217  Q
    |||||||||||||||||    
T  3391219 gagcttatcacaggttc 3391203  T

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Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 3315176 - 3315392
Alignment:
Q  1 tcaaaacttagaagtgtttcggtacaatgtgactcggagattcaactgaaacaagaattccgaaaatttcttgatgatctatatggtgcaggtcttactg 100  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| |||||| ||||||||||||||    
T  3315176 tcaaaacttagaagtgtttcagtacaatgtgactcagagattcaactgaaacaagaattcagaagatttcttgatgatatatatgatgcaggtcttactg 3315275  T
Q  101 aattgggaatgtcacatgcatcacacatttcggatctttccttgagatcgcttttgattggaatgggaaattgcaacatagtcatcaatactctggggaa 200  Q
    |||| ||||  ||||||| |||||| |||| |||||||||||||||||| |||||| ||||||| |||| |||| |||||||||||||||||||  ||||    
T  3315276 aatttggaacatcacatggatcacaaattttggatctttccttgagatctcttttgtttggaatcggaagttgccacatagtcatcaatactcttcggaa 3315375  T
Q  201 gagcttatcacaggttc 217  Q
    |||||||||| ||||||    
T  3315376 gagcttatcagaggttc 3315392  T

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Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 3364487 - 3364702
Alignment:
Q  1 tcaaaacttagaagtgtttcggtacaatgtgactcggagattcaactgaaacaagaattccgaaaatttcttgatgatctatatggtgcaggtcttactg 100  Q
    |||| ||||||||||||||||||||||||||| || |||||||||||||| ||||||||| ||| |||||||||||||||||||| ||||||||||||||    
T  3364487 tcaagacttagaagtgtttcggtacaatgtgattcagagattcaactgaagcaagaattcggaagatttcttgatgatctatatgatgcaggtcttactg 3364586  T
Q  101 aattgggaatgtcacatgcatcacacatttcggatctttccttgagatcgcttttgattggaatgggaaattgcaacatagtcatcaatactctggggaa 200  Q
    || || |||  |||||||||| ||| |||||| ||||| || ||||||| |||||| |||| || |||| |||| |||| |||||||| |||||  | ||    
T  3364587 aaatgagaacatcacatgcattacaaatttcgaatcttaccatgagatcccttttgtttggtatcggaagttgccacattgtcatcaacactcttcgcaa 3364686  T
Q  201 gagcttatcacaggtt 216  Q
    ||||||||||||||||    
T  3364687 gagcttatcacaggtt 3364702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 13787542 - 13787711
Alignment:
Q  1 tcaaaacttagaagtgtttcggtacaatgtgactcggagattcaactgaaacaagaattccgaaaatttcttgatgatctatatggtgcaggtcttactg 100  Q
    ||||||| |||||||||||||||||| ||  | || |||||||| |||||| ||| |||  ||| ||||||||| | |||||| ||||||||||| |||     
T  13787542 tcaaaacatagaagtgtttcggtacattgccaatcagagattcatctgaaagaagtattaagaagatttcttgaaggtctatacggtgcaggtctcacta 13787641  T
Q  101 aattgggaatgtcacatgcatcacacatttcggatctttccttgagatcgcttttgattggaatgggaaa 170  Q
    || | ||||  || ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||    
T  13787642 aaattggaacatcgcatgcatcacaaatttcggatctttccttgagatcacttttgattggaataggaaa 13787711  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 37 - 217
Target Start/End: Original strand, 3429556 - 3429740
Alignment:
Q  37 gagattcaactgaaacaagaattccgaaaatttcttgatgatctatatggtgcaggtcttactgaattgggaatgtcacatgcatcacacatttcggatc 136  Q
    ||||| ||||| || ||||||||  |||  ||||||  || ||||| || ||||| ||||| |||||| ||||  |||||||||||| | || ||| |||    
T  3429556 gagatgcaactaaagcaagaattaagaaggtttcttcgtggtctatgtgatgcagatcttaatgaattcggaacatcacatgcatcagaaatgtcgaatc 3429655  T
Q  137 tttccttgagatcgcttttgattggaatgggaaattgcaac----atagtcatcaatactctggggaagagcttatcacaggttc 217  Q
    ||| ||||||||| ||| ||||||||||||||| |||| ||    ||||||||  ||||||| || ||||| |||||||||||||    
T  3429656 ttttcttgagatctcttatgattggaatgggaagttgccacatatatagtcattgatactcttggcaagagtttatcacaggttc 3429740  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3407206 - 3407148
Alignment:
Q  1 tcaaaacttagaagtgtttcggtacaatgtgactcggagattcaactgaaacaagaatt 59  Q
    |||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||||||    
T  3407206 tcaaaacttagatgtgtttcggtacaatgtcactcagagattcaacttaaacaagaatt 3407148  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 217
Target Start/End: Complemental strand, 3262405 - 3262300
Alignment:
Q  112 tcacatgcatcacacatttcggatctttccttgagatcgcttttgattggaatgggaaattgcaacatagtcatcaatactctggggaagagcttatcac 211  Q
    ||||||||||||||  | ||  ||||||||| ||||||||| |||||| |||| |||| |||| || |||||||||| ||||| || |||||| ||||||    
T  3262405 tcacatgcatcacaagtctcaaatctttcctcgagatcgctattgattagaataggaagttgccacgtagtcatcaaaactcttggaaagagcatatcac 3262306  T
Q  212 aggttc 217  Q
    ||||||    
T  3262305 aggttc 3262300  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 3407119 - 3407006
Alignment:
Q  103 ttgggaatgtcacatgcatcacacatttcggatctttccttgagatcgcttttgattggaatgggaaattgcaacatagtcatcaatactctggggaaga 202  Q
    |||| ||| |||||||| ||||| || || ||||||||||||  ||| ||||||||||||||||||| || | ||| ||||| | | ||||| || ||||    
T  3407119 ttggaaatatcacatgcttcacaaatctcagatctttccttgcaatctcttttgattggaatgggaagttaccacaaagtcaacgagactcttggcaaga 3407020  T
Q  203 gcttatcacaggtt 216  Q
    ||||||| ||||||    
T  3407019 gcttatcgcaggtt 3407006  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 7164411 - 7164327
Alignment:
Q  134 atctttccttgagatcgcttttgattggaatgggaaattgcaacatagtcatcaatactctggggaagagcttatcacaggttct 218  Q
    |||||||||||||||| ||||||||||||||||||| |||  ||||| ||||  ||||||  || |||||| |||| ||||||||    
T  7164411 atctttccttgagatcacttttgattggaatgggaagttgtcacataatcattgatactcgtggcaagagcatatcccaggttct 7164327  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 3286290 - 3286217
Alignment:
Q  112 tcacatgcatcacacatttcggatctttccttgagatcgcttttgattggaatgggaaattgcaacatagtcat 185  Q
    |||||||||||||| || ||  ||| ||| |||||||| |||||||||||||||||||||| | ||||| ||||    
T  3286290 tcacatgcatcacaaatctcaaatccttctttgagatcacttttgattggaatgggaaatttccacatattcat 3286217  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 3324750 - 3324670
Alignment:
Q  137 tttccttgagatcgcttttgattggaatgggaaattgcaacatagtcatcaatactctggggaagagcttatcacaggttc 217  Q
    |||||| ||||||||||||||||||| | |||| ||||| ||| | |||||| ||||| || |||| | ||||||||||||    
T  3324750 tttcctggagatcgcttttgattggattaggaagttgcagcatggccatcaacactcttggcaagaacatatcacaggttc 3324670  T

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Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 15803229 - 15803444
Alignment:
Q  1 tcaaaacttagaagtgtttcggtacaatgtgactcggagattcaactgaaacaagaattccgaaaatttcttgatgatctatatggtgcaggtcttactg 100  Q
    |||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||| |||||||||| ||||||||| ||||||||||||||    
T  15803229 tcaagacttagaagtgtttcagtacaatgtgactcagagattcaactgaaacaagaattcagaagatttcttgataatctatatgatgcaggtcttactg 15803328  T
Q  101 aattgggaatgtcacatgcatcacacatttcggatctttccttgagatcgcttttgattggaatgggaaattgcaacatagtcatcaatactctggggaa 200  Q
    || ||||||  ||||| |||| ||| ||||||||||||| | ||||||| |||||| |||| || |||| |||  |||| |||||||||||||| || ||    
T  15803329 aagtgggaacatcacaggcattacaaatttcggatcttttcatgagatcccttttgtttggtatcggaagttgtcacattgtcatcaatactcttggcaa 15803428  T
Q  201 gagcttatcacaggtt 216  Q
    ||||||||||| ||||    
T  15803429 gagcttatcacgggtt 15803444  T

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Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 217
Target Start/End: Complemental strand, 6905647 - 6905497
Alignment:
Q  67 tttcttgatgatctatatggtgcaggtcttactgaattgggaatgtcacatgcatcacacatttcggatctttccttgagatcgcttttgattggaatgg 166  Q
    |||||||||| |||||||||||||  ||||||||||| || ||  |||||||||||| | || |||||| ||||||||| ||| |||||||||  |||||    
T  6905647 tttcttgatggtctatatggtgcaaatcttactgaatcggaaacatcacatgcatcaaaaatctcggatatttccttgaaatctcttttgattacaatgg 6905548  T
Q  167 gaaattgcaacatagtcatcaatactctggggaagagcttatcacaggttc 217  Q
    ||| |||| |||||||| || ||||||| || |||||||||||||||||||    
T  6905547 gaagttgccacatagtcgtcgatactcttggcaagagcttatcacaggttc 6905497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 32410868 - 32410763
Alignment:
Q  111 gtcacatgcatcacacatttcggatctttccttgagatcgcttttgattggaatgggaaattgcaacatagtcatcaatactctggggaagagcttatca 210  Q
    |||||||||||||||  | ||  ||| ||| ||||| |||||||||||| ||||||||| |||| ||||||| ||  ||||||| || |||||| |||||    
T  32410868 gtcacatgcatcacaattctcaaatcattctttgaggtcgcttttgattagaatgggaagttgccacatagttattgatactcttggcaagagcatatca 32410769  T
Q  211 caggtt 216  Q
    ||||||    
T  32410768 caggtt 32410763  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 14766824 - 14766611
Alignment:
Q  4 aaacttagaagtgtttcggtacaatgtgactcggagattcaactgaaacaagaattccgaaaatttcttgatgatctatatggtgcaggtcttactgaat 103  Q
    |||||||||||| ||  |||||||||  ||||| |||||||||| |  |  |||||   || |||| ||||||||||| ||| ||||  | ||||||||     
T  14766824 aaacttagaagttttcaggtacaatgccactcgaagattcaactaacccgggaattaacaagatttattgatgatctacatgatgcaaattttactgaac 14766725  T
Q  104 tgggaatgtcacatgcatcacacatttcggatctttccttgagatcgcttttgattggaatgggaaattgcaacatagtcatcaatactctggggaagag 203  Q
    ||| ||  |||||| ||||||| || || | |||||| ||||| || ||||||||||||||||||| || | ||| ||| || |||||||| || || ||    
T  14766724 tggaaacatcacatacatcacaaatctctgttctttcgttgaggtcacttttgattggaatgggaagttacgacacagttataaatactcttggcaaaag 14766625  T
Q  204 cttatcacaggttc 217  Q
    ||||||||||||||    
T  14766624 cttatcacaggttc 14766611  T

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Target: scaffold0468 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 5937 - 5837
Alignment:
Q  117 tgcatcacacatttcggatctttccttgagatcgcttttgattggaatgggaaattgcaacatagtcatcaatactctggggaagagcttatcacaggtt 216  Q
    ||||||||| || |||||||||||||||| ||| |||||||||  |||||||| |||| |||||||  ||||| |||| || || |||||||||||||||    
T  5937 tgcatcacaaatctcggatctttccttgaaatctcttttgattacaatgggaagttgccacatagttgtcaatgctcttggcaatagcttatcacaggtt 5838  T
Q  217 c 217  Q
    |    
T  5837 c 5837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 66 - 217
Target Start/End: Complemental strand, 8371465 - 8371314
Alignment:
Q  66 atttcttgatgatctatatggtgcaggtcttactgaattgggaatgtcacatgcatcacacatttcggatctttccttgagatcgcttttgattggaatg 165  Q
    |||||||||||||||||||| ||||  | |||||||| ||| ||  |||||  ||||||| || || | |||||| || ||||| |||||||||||||||    
T  8371465 atttcttgatgatctatatgatgcaaattttactgaactggaaacatcacacacatcacaaatctctgttctttcattaagatcacttttgattggaatg 8371366  T
Q  166 ggaaattgcaacatagtcatcaatactctggggaagagcttatcacaggttc 217  Q
    || | ||   ||| |||||| |||||||| || |||||  ||||||||||||    
T  8371365 ggtagttatcacacagtcataaatactcttggcaagagtatatcacaggttc 8371314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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