View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9567_high_3 (Length: 418)
Name: NF9567_high_3
Description: NF9567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9567_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 37223187 - 37223600
Alignment:
| Q |
1 |
ccccgagacctctgcatatcacaatgtctctacctacaaagtt-attttcacggtgacttaaactataatctttaatgataataatactcgatccctgtc |
99 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37223187 |
ccccgagacctctgcatatcgcaatgtctgtacctacaaagtttatgttcacggtgacttaaattataatctttaatgataataatactcgatccctgtc |
37223286 |
T |
|
| Q |
100 |
aaaagttactattgcttaatattatataacagaaatgttgtaggttatagttaattttagtttgaaaaataaattattaatttcatccataaaacattgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37223287 |
aaaagttactattgcttaatattatataacagaaatgtcgtaggttatagttaattttagtttgaaaaataaattattaatttcatccataaaacattgt |
37223386 |
T |
|
| Q |
200 |
gttgcagaagatcatccagattatac---gtgtggtcctgaaacatggaagatggataattgagggggagaattaggaaaccaatatgaattgaaat-ag |
295 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
37223387 |
gttgctgaagatcatccagattataccgtgtgtggtcctgaaacatggaagatggataattgaaggggagaattaggaaaccaatatgaattgaaataag |
37223486 |
T |
|
| Q |
296 |
gaaggaag--------------cttaaaggatttcttgtaattaaagctatcacaccccctgcattctagttgtaggcgcatagtacaccagtagttgga |
381 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
37223487 |
gaaggaagcacatgagtttaatcttaaaggatttcttgtaattaaagctatcacaccccctgcattctagttgcaggcgcatagtacactagtagttgga |
37223586 |
T |
|
| Q |
382 |
tttggttgaacctt |
395 |
Q |
| |
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|||||||||||||| |
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| T |
37223587 |
tttggttgaacctt |
37223600 |
T |
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