View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9567_low_1 (Length: 544)

Name: NF9567_low_1
Description: NF9567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9567_low_1
NF9567_low_1
[»] chr4 (15 HSPs)
chr4 (15-528)||(7878917-7879421)
chr4 (136-524)||(7779078-7779452)
chr4 (171-528)||(7772956-7773313)
chr4 (272-524)||(7908840-7909091)
chr4 (248-487)||(7905153-7905381)
chr4 (449-507)||(7801198-7801256)
chr4 (449-507)||(7823530-7823588)
chr4 (299-482)||(37826289-37826468)
chr4 (449-528)||(7766212-7766291)
chr4 (449-496)||(7814049-7814096)
chr4 (454-528)||(7787034-7787108)
chr4 (453-498)||(7237195-7237240)
chr4 (455-513)||(7771944-7772002)
chr4 (455-513)||(7790629-7790687)
chr4 (318-374)||(7790764-7790820)
[»] chr3 (3 HSPs)
chr3 (301-372)||(11014798-11014869)
chr3 (301-374)||(11023804-11023877)
chr3 (304-372)||(11005237-11005305)
[»] chr8 (3 HSPs)
chr8 (298-436)||(4961822-4961956)
chr8 (449-494)||(12195892-12195937)
chr8 (449-494)||(12440320-12440365)
[»] chr7 (1 HSPs)
chr7 (298-374)||(48884534-48884610)
[»] chr2 (1 HSPs)
chr2 (301-493)||(29350997-29351179)
[»] chr5 (2 HSPs)
chr5 (301-378)||(29688812-29688889)
chr5 (301-378)||(29696925-29697002)


Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-172; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 15 - 528
Target Start/End: Complemental strand, 7879421 - 7878917
Alignment:
Q  15 cagagaaatgacaagggccaaagttagtagaatgacagaagccactaatattagagnnnnnnnncttttattttttccttcaacatgtatatctcatcag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||    
T  7879421 cagagaaatgacaagggccaaagttagtagaatgacagaagccactaatattagagcaaaaaaaactttattttttccttcaacatgtatatctcatcag 7879322  T
Q  115 ttataacaacatacatttagcattcaatccagttacaccttca---atagcagcaagtcacacatcacaaagaaagttgtcaatatttccaataagcaaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| ||   ||||||||||||||||||||| |    
T  7879321 ttataacaacatacatttagcattcaatccagttacaccttcataaatagcagcaagtcacacatcacaaacaac--tgtcaatatttccaataagcata 7879224  T
Q  212 --acaaat-agtcaaccaataaacattccatgatataccagttcaactcatttacataccagctcatgttacaaatgaggttaccaatacagtcaaacac 308  Q
      |||| | ||||||||| |||||||||||||| |||   ||||| ||||||||||||  ||||||||||||||||||||||||||||||||| ||||||    
T  7879223 cgacaatttagtcaaccagtaaacattccatgacatattggttcacctcatttacataatagctcatgttacaaatgaggttaccaatacagtaaaacac 7879124  T
Q  309 atattcccctacaaatgcagccacccaagagtttattatacaacataactataaatatgaagaaaatggttgacaatatttcacaacctcggtcttcttg 408  Q
    || || |||||||||||||||||||||||| ||          |||||||||||||||||||||||||||||| ||||||||||    ||||||||||||    
T  7879123 atgttaccctacaaatgcagccacccaagaatt----------cataactataaatatgaagaaaatggttgagaatatttcacg---tcggtcttcttg 7879037  T
Q  409 tttgtgtgatctttcttaaacttgctcgttgtaaccagggccagggagtgaaagcagagactccgtatacatgacaacttcggatggactattacagaag 508  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7879036 tttgtgtgatctttcttaaacttgctcgttgtcaccagggacagggagtgaaagtagagactccgtatacatgacaacttcggatggactattacagaag 7878937  T
Q  509 aagcgatgccttaataactg 528  Q
     |||||||||||||||||||    
T  7878936 gagcgatgccttaataactg 7878917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 136 - 524
Target Start/End: Original strand, 7779078 - 7779452
Alignment:
Q  136 attcaatccagttacaccttca---atagcagcaagtcacacatcacaaagaaagttgtcaatatttccaataagcaaaacaaatagtcaaccaataaac 232  Q
    ||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7779078 attcaatccagttacacctgcataaatagcagcaagtcacacatcacaaagaaagttgtcaatatttccaataagcataacaaatagtcaaccaataaac 7779177  T
Q  233 attccatgatataccagttcaactcatttacataccagctcatgttacaaatgaggttaccaatacagtcaaacacatattcccctacaaatgcagccac 332  Q
    ||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||           
T  7779178 attccatgatatatcaggtcaactcatttacatactagctcatgttacaaatgaggttaccaatacaggcaaacacatattaacctacaaatg------- 7779270  T
Q  333 ccaagagtttattatacaacataactataaatatgaagaaaatggttgacaatatttcacaacctcggtcttcttgtttgtgtgatctttcttaaacttg 432  Q
         |||| || |||||| |||| ||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||  |||||| |||||||||    
T  7779271 ----aagttcataatacaatataattataattatgaagaaaatggttgagaatattccacaacctcggtcttcttgtttgtgcaatctttattaaacttg 7779366  T
Q  433 ctcgttgtaaccagggccagggagtgaaagcagagactccgtatacatgacaacttcggatggactattacagaagaagcgatgccttaata 524  Q
    |   |||| |      | |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  7779367 cggattgtca------ctagggagcgaaagcagagactccgtatacatgacaacttcgaatggactattacagaaggagcgatgccttaata 7779452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 171 - 528
Target Start/End: Original strand, 7772956 - 7773313
Alignment:
Q  171 acacatcacaaagaaagttgtcaatatttccaataagcaaa--acaaatagtcaaccaataaacattccatgatataccagttcaactcatttacatacc 268  Q
    |||||||||||| |||||||||||||||||||||||||  |  ||||||| | ||||||||||||||||||||  ||    |||| ||||||||||||      
T  7772956 acacatcacaaacaaagttgtcaatatttccaataagcctatgacaaataattaaccaataaacattccatgacgtaatgattcagctcatttacataat 7773055  T
Q  269 agctcatgttacaaatgaggttaccaatacagtcaaacacatattcccctacaaatgcagccacccaagagtttattatacaacataactataaatatga 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |  |||||| || |||||| |||| ||||| |||||    
T  7773056 agctcatgttacaaatgaggttaccaatacagtcaaacacatattgccctacaaatgcaaccatc--agagttcataatacaatataattataattatga 7773153  T
Q  369 agaaaatggttgacaatatttcacaacctcggtcttcttgtttgtgtgatctttcttaaacttgctcgttgtaaccagggccagggagtgaaagcagaga 468  Q
    ||||||| ||||| ||||||||||||  |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||    
T  7773154 agaaaatagttgagaatatttcacaatgtcggtcttcttgtttgtgtgatctttcttaaatttgcttgttgtcaccagggccagggagtgaaagcagaga 7773253  T
Q  469 ctccgtatacatgacaacttcggatggactattacagaagaagcgatgccttaataactg 528  Q
    ||| ||||||||||||||||||||||||||||||||||||  | ||||||||||||||||    
T  7773254 ctcagtatacatgacaacttcggatggactattacagaaggcgtgatgccttaataactg 7773313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 272 - 524
Target Start/End: Complemental strand, 7909091 - 7908840
Alignment:
Q  272 tcatgttacaaatgaggttaccaatacagtcaaacacatattcccctacaaatgcagccacccaagagtttattatacaacataactataaatatgaaga 371  Q
    ||||||||||||||  |||||||||||||||||||| ||| | ||||| ||||||| ||||||||||||| |  |||||| |||| ||||||||||||||    
T  7909091 tcatgttacaaatgcagttaccaatacagtcaaacatatactaccctaaaaatgcaaccacccaagagttcaaaatacaatataattataaatatgaaga 7908992  T
Q  372 aaatggttgacaatatttcacaacctc-----ggtcttcttgtttgtgtgatctttcttaaacttgctcgttgtaaccagggccagggagtgaaagcaga 466  Q
    |||| ||||| ||||||||||||||||      ||||||||| |||||||||||||||||||||||||| |||| |      ||||||||||||||||||    
T  7908991 aaatcgttgagaatatttcacaacctcagtcttgtcttcttgattgtgtgatctttcttaaacttgctcattgtca------ccagggagtgaaagcaga 7908898  T
Q  467 gactccgtatacatgacaacttcggatggactattacagaagaagcgatgccttaata 524  Q
    ||||| |||||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  7908897 gactcggtatacatgacaacttcggatggactattaaagaaggtgcgatgccttaata 7908840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 248 - 487
Target Start/End: Complemental strand, 7905381 - 7905153
Alignment:
Q  248 agttcaactcatttacataccagctcatgttacaa------atgaggttaccaatacagtcaaacacatattcccctacaaatgcagccacccaagagtt 341  Q
    |||||| ||||||||||||| ||||||||||||||      |||  ||| |||||||||| ||||||||||| || ||||||||||||           |    
T  7905381 agttcagctcatttacatactagctcatgttacaattacaaatgcagttgccaatacagttaaacacatattaccttacaaatgcagc-----------t 7905293  T
Q  342 tattatacaacataactataaatatgaagaaaatggttgacaatatttcacaacctcggtcttcttgtttgtgtgatctttcttaaacttgctcgttgta 441  Q
     || |||||| |||| |||||  ||||||||||||||||| |||||| ||| ||||| | ||||||||||||| ||||||||||||||||||||||| |     
T  7905292 catgatacaatataattataatgatgaagaaaatggttgagaatattccacgacctcagacttcttgtttgtgcgatctttcttaaacttgctcgttatc 7905193  T
Q  442 accagggccagggagtgaaagcagagactccgtatacatgacaact 487  Q
    |      || ||||||||||||||||||||||||||||||||||||    
T  7905192 a------ccggggagtgaaagcagagactccgtatacatgacaact 7905153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 449 - 507
Target Start/End: Complemental strand, 7801256 - 7801198
Alignment:
Q  449 ccagggagtgaaagcagagactccgtatacatgacaacttcggatggactattacagaa 507  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  7801256 ccagggagtgaaagcagagactcggtatacatgacaactttggatggactgttacagaa 7801198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 449 - 507
Target Start/End: Complemental strand, 7823588 - 7823530
Alignment:
Q  449 ccagggagtgaaagcagagactccgtatacatgacaacttcggatggactattacagaa 507  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  7823588 ccagggagtgaaagcagagactcggtatacatgacaactttggatggactgttacagaa 7823530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 482
Target Start/End: Original strand, 37826289 - 37826468
Alignment:
Q  299 agtcaaacacatattcccctacaaatgcagccacccaagagtttattatacaacataactataaatatgaagaaaatggtt---gacaatatttcacaac 395  Q
    ||||||||||||||| |||||||||| ||| |||||||||||| || |||||| |||| |  |||||| |||||||||||    || |||||||   |||    
T  37826289 agtcaaacacatattaccctacaaatccagacacccaagagttcataatacaatataattgaaaatatcaagaaaatggtgaaggagaatattttgaaac 37826388  T
Q  396 ctcggtcttcttgtttgtgtgatctttcttaaacttgctcgttgtaaccagggccagggagtgaaagcagagactccgtatacatga 482  Q
    |||  ||||||||||||| | ||||| |||||||||||||   || | |||||      | ||||||||||||||||||||||||||    
T  37826389 ctcattcttcttgtttgtatcatctt-cttaaacttgctctccgtcaacaggg------aatgaaagcagagactccgtatacatga 37826468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 528
Target Start/End: Complemental strand, 7766291 - 7766212
Alignment:
Q  449 ccagggagtgaaagcagagactccgtatacatgacaacttcggatggactattacagaagaagcgatgccttaataactg 528  Q
    |||| ||||||||| |||||||| ||||||| |||||||||||||||||| || |||||| || |||||| ||| |||||    
T  7766291 ccagagagtgaaagtagagactcggtatacacgacaacttcggatggactgttgcagaaggagtgatgccctaaaaactg 7766212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 496
Target Start/End: Complemental strand, 7814096 - 7814049
Alignment:
Q  449 ccagggagtgaaagcagagactccgtatacatgacaacttcggatgga 496  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||    
T  7814096 ccagggagtgaaagcagagactcggtatacatgacaactttggatgga 7814049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 454 - 528
Target Start/End: Complemental strand, 7787108 - 7787034
Alignment:
Q  454 gagtgaaagcagagactccgtatacatgacaacttcggatggactattacagaagaagcgatgccttaataactg 528  Q
    ||||||||| |||||||| ||||||| |||||||||||||||||| || |||||| || |||||| ||| |||||    
T  7787108 gagtgaaagtagagactctgtatacacgacaacttcggatggactgttgcagaaggagtgatgccctaaaaactg 7787034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 7237195 - 7237240
Alignment:
Q  453 ggagtgaaagcagagactccgtatacatgacaacttcggatggact 498  Q
    ||||||||||||||||||| ||||||||||||||||| ||| ||||    
T  7237195 ggagtgaaagcagagactctgtatacatgacaacttcagattgact 7237240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 513
Target Start/End: Complemental strand, 7772002 - 7771944
Alignment:
Q  455 agtgaaagcagagactccgtatacatgacaacttcggatggactattacagaagaagcg 513  Q
    |||||||||||||| || ||||||||||||| ||| ||| |||| ||||||||| ||||    
T  7772002 agtgaaagcagagattctgtatacatgacaatttcagattgactgttacagaaggagcg 7771944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 513
Target Start/End: Complemental strand, 7790687 - 7790629
Alignment:
Q  455 agtgaaagcagagactccgtatacatgacaacttcggatggactattacagaagaagcg 513  Q
    |||||||||||||| || |||||||||| |||||| ||| |||| ||||||||| ||||    
T  7790687 agtgaaagcagagattctgtatacatgaaaacttcagattgactgttacagaaggagcg 7790629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 7790820 - 7790764
Alignment:
Q  318 tacaaatgcagccacccaagagtttattatacaacataactataaatatgaagaaaa 374  Q
    |||||||||||||||||||||||  || | |||| |||| ||||||||| |||||||    
T  7790820 tacaaatgcagccacccaagagtacataaaacaatataattataaatataaagaaaa 7790764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 301 - 372
Target Start/End: Original strand, 11014798 - 11014869
Alignment:
Q  301 tcaaacacatattcccctacaaatgcagccacccaagagtttattatacaacataactataaatatgaagaa 372  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| ||| || |||| ||||||||| |||||    
T  11014798 tcaaacacatattacccaacaaatgcagccacccaagagtttataatataatataattataaatatcaagaa 11014869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 301 - 374
Target Start/End: Original strand, 11023804 - 11023877
Alignment:
Q  301 tcaaacacatattcccctacaaatgcagccacccaagagtttattatacaacataactataaatatgaagaaaa 374  Q
    ||||||||||||| |||  ||| |||||| |||||||||||||| |||||  |||| ||||||||| |||||||    
T  11023804 tcaaacacatattacccggcaagtgcagctacccaagagtttataatacactataattataaatattaagaaaa 11023877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 372
Target Start/End: Original strand, 11005237 - 11005305
Alignment:
Q  304 aacacatattcccctacaaatgcagccacccaagagtttattatacaacataactataaatatgaagaa 372  Q
    |||||||||| ||| || | ||||||||||||||||||||| || ||  |||| ||||||||| |||||    
T  11005237 aacacatattacccaactagtgcagccacccaagagtttataatgcactataattataaatatcaagaa 11005305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 298 - 436
Target Start/End: Original strand, 4961822 - 4961956
Alignment:
Q  298 cagtcaaacacatattcccctacaaatgcagccacccaagagtttattatacaacataactataaatatgaagaaaatggt---tgacaatatttcacaa 394  Q
    ||||||||||||||||  ||||||||||||||||||| ||       |||||||||||||||||||||| |||||||||||   ||| ||||||||| ||    
T  4961822 cagtcaaacacatattagcctacaaatgcagccacccgagc------tatacaacataactataaatatcaagaaaatggtgaatgagaatatttcaaaa 4961915  T
Q  395 cctcggtcttcttgtttgtgtgatctttcttaaacttgctcg 436  Q
    |||   ||||||| ||| ||| ||| ||| ||||||||||||    
T  4961916 cctgattcttcttatttatgtcatc-ttcataaacttgctcg 4961956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 494
Target Start/End: Complemental strand, 12195937 - 12195892
Alignment:
Q  449 ccagggagtgaaagcagagactccgtatacatgacaacttcggatg 494  Q
    ||||||||||||||||||||||| ||||||||| | ||||| ||||    
T  12195937 ccagggagtgaaagcagagactctgtatacatggccacttcagatg 12195892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 494
Target Start/End: Complemental strand, 12440365 - 12440320
Alignment:
Q  449 ccagggagtgaaagcagagactccgtatacatgacaacttcggatg 494  Q
    ||||||||||||||||||||||| ||||||||| | ||||| ||||    
T  12440365 ccagggagtgaaagcagagactctgtatacatggccacttcagatg 12440320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 374
Target Start/End: Complemental strand, 48884610 - 48884534
Alignment:
Q  298 cagtcaaacacatattcccctacaaatgcagccacccaagagtttattatacaacataactataaatatgaagaaaa 374  Q
    |||||||||||||||| | ||||||||||||||||| ||||||| || || ||| |||  ||||||||| |||||||    
T  48884610 cagtcaaacacatattactctacaaatgcagccaccaaagagttcataatgcaatatagttataaatatcaagaaaa 48884534  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 493
Target Start/End: Complemental strand, 29351179 - 29350997
Alignment:
Q  301 tcaaacacatattcccctacaaatgcagccacccaagagtttattatacaacataactataaatatgaagaaaatggttgacaatatttcacaacctcgg 400  Q
    ||||||||||| | ||||||||||||| ||||||||||||| || |||||| |||| ||| ||   ||| | | ||   || ||||||||||||||||      
T  29351179 tcaaacacatagtaccctacaaatgcaaccacccaagagttcataatacaatataattatcaa---gaaaatagtgaaagataatatttcacaacctcat 29351083  T
Q  401 tcttcttgtttgtgtgatctttcttaaacttgctcgttgtaaccagggccagggagtgaaagcagagactccgtatacatgacaacttcggat 493  Q
    |||||||||||| || ||| ||||||| ||||||| |||| |      || ||||||||||||| ||||||  | |||||||| |||||||||    
T  29351082 tcttcttgtttgagtcatc-ttcttaagcttgctcattgtca------ccggggagtgaaagcatagactctctgtacatgaccacttcggat 29350997  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 378
Target Start/End: Complemental strand, 29688889 - 29688812
Alignment:
Q  301 tcaaacacatattcccctacaaatgcagccacccaagagtttattatacaacataactataaatatgaagaaaatggt 378  Q
    ||||||||||||| |||||| ||||||||||| |||||||  || |||| | |||| |||||| || | |||||||||    
T  29688889 tcaaacacatattaccctacgaatgcagccactcaagagtacataatactatataattataaagatcatgaaaatggt 29688812  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 378
Target Start/End: Complemental strand, 29697002 - 29696925
Alignment:
Q  301 tcaaacacatattcccctacaaatgcagccacccaagagtttattatacaacataactataaatatgaagaaaatggt 378  Q
    ||||||| ||||| ||||||||||||||| || |||||||  || |||||| |||| |||||| || | |||||||||    
T  29697002 tcaaacatatattaccctacaaatgcagctactcaagagtccataatacaatataattataaagatcatgaaaatggt 29696925  T

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