View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9567_low_12 (Length: 364)
Name: NF9567_low_12
Description: NF9567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9567_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 46932943 - 46933276
Alignment:
| Q |
18 |
cttctaaaaccttttcttaattctcaaattctcagttcacacccccctgactctttatctttctgtataatagtactctctaatattactactgcaatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46932943 |
cttctaaaaccttttcttaattctcaaattctcagttcacacccccctgactctttatctttctgtataatagtactctctaatattactactgcaatgt |
46933042 |
T |
|
| Q |
118 |
ttcagcggctgacatggtgacagtacctatagtcctttatatttttctgattcatctgtgagtattactagtctcgtgaatccnnnnnnnnnnnnnnctg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
46933043 |
ttcagcggctgacatggtgacagtacctatagtcctttatatttttctgattcatctgtgagtattactagtctcgtgaatccttttttgtttttttctg |
46933142 |
T |
|
| Q |
218 |
ttctaaaacacttatttattaccactaccttattcccttgttcatgttacgtgcatatttatgggaattgtatacannnnnnnnnnnnnnnatcttaatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
46933143 |
ttctaaaacacttatttattaccactaccttattcccttgttcatgttacgtgcatatttatgggaattgtatacattttttaatttttttatcttaatt |
46933242 |
T |
|
| Q |
318 |
taacaacaagacgaactaacccctctctgtgctc |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
46933243 |
taacaacaagacgaactaacccctctctgtgctc |
46933276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University