View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9567_low_13 (Length: 354)
Name: NF9567_low_13
Description: NF9567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9567_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 348
Target Start/End: Original strand, 43476258 - 43476588
Alignment:
| Q |
17 |
tcacatttgacatacaagatcaaagctagtttgatggatcagttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatgga |
116 |
Q |
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| T |
43476258 |
tcacatttgacatacaagatcaaagctagtttgatggatcggttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatgga |
43476357 |
T |
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| Q |
117 |
ttatgaagaaacatctactcatgaccaagataagatgacctctatccgcactcttattgttgttgcatatgttcgtcaatggcatatttctcgtaatcat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43476358 |
ttatgaagaaacatctactcatgaccaagataagatgacctctatccacactcttattgttgttgcatatgttcgtcaatggcacatttctcgtaatcat |
43476457 |
T |
|
| Q |
217 |
gggagaagtcaaaggggaaaaatgtctttctaaataaaccagcgaagatgttcgtcaatagtattctcctaatatagacccctttttaaatgataatctt |
316 |
Q |
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| T |
43476458 |
gggagaagtcaaaggggaaaaatgtctttctaaat-aaccagcgaagatgtccgtcaatagtattctcctaatatagacacctttttaaatgataatctt |
43476556 |
T |
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| Q |
317 |
ccgagaaaagtttatatggtaccaacaccaaa |
348 |
Q |
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| T |
43476557 |
ccgagaaaagtttatatggtacctccaccaaa |
43476588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 206
Target Start/End: Complemental strand, 47937613 - 47937437
Alignment:
| Q |
28 |
atacaagatcaaagcta-gtttgatggatcagttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaa |
126 |
Q |
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| T |
47937613 |
atacaagatcaaaactaagtctgatgggtcagttgaacgctacaaagctcgtcttgttgctaagggattcgctcaacagtatggtatggattatgaagaa |
47937514 |
T |
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| Q |
127 |
acatctactcatgaccaagataagatgacctctatccgcactcttattgttgttgcatatgttcgtcaatggcatatttc |
206 |
Q |
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| T |
47937513 |
acatttgctc---ccgttgcaaaaatgaccactatccgcactcttattgctgttgcatctatacgtcagtggcatatttc |
47937437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 47631116 - 47631013
Alignment:
| Q |
28 |
atacaagatcaaagcta-gtttgatggatcagttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaa |
126 |
Q |
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||||||||||||| ||| || |||||| |||||||| | ||||||||||||||||| ||||| |||| | |||||| ||| ||||||||||||||||| |
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| T |
47631116 |
atacaagatcaaaactaagtctgatgggtcagttgaacgctacaaagctcgtcttgttgctaagggattttctcaacagtatggtatggattatgaagaa |
47631017 |
T |
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| Q |
127 |
acat |
130 |
Q |
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|||| |
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| T |
47631016 |
acat |
47631013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 10052795 - 10052692
Alignment:
| Q |
28 |
atacaagatcaaagcta-gtttgatggatcagttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaa |
126 |
Q |
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||||||||||||| ||| || |||||| |||||||| | ||||||||||||||||| ||||| ||||| |||||| ||| ||||||||||||||||| |
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| T |
10052795 |
atacaagatcaaaactaagtctgatgggtcagttgaacgctacaaagctcgtcttgttgctaagggattcgctcaacagtatggtatggattatgaagaa |
10052696 |
T |
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| Q |
127 |
acat |
130 |
Q |
| |
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|||| |
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| T |
10052695 |
acat |
10052692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 46821071 - 46821174
Alignment:
| Q |
28 |
atacaagatcaaagcta-gtttgatggatcagttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaa |
126 |
Q |
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||||||||||||| ||| || |||||| |||||||| | ||||||||||||||||| ||||| ||||| |||||| ||| ||||||||||||||||| |
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| T |
46821071 |
atacaagatcaaaactaagtctgatgggtcagttgaacgctacaaagctcgtcttgttgctaagggattcactcaacagtatggtatggattatgaagaa |
46821170 |
T |
|
| Q |
127 |
acat |
130 |
Q |
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|||| |
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| T |
46821171 |
acat |
46821174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 9878727 - 9878643
Alignment:
| Q |
44 |
agtttgatggatcagttgatcattacaaagctcgtcttgtggctaactgattctttcaacattatagtatggattatgaagaaac |
128 |
Q |
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|||||||||| || ||||| | |||||||||||||||||||||||| ||| | |||||| ||| || | |||||||||||||| |
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| T |
9878727 |
agtttgatgggtctgttgagcgttacaaagctcgtcttgtggctaaaggatattctcaacaatatggtttagattatgaagaaac |
9878643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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