View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9567_low_15 (Length: 312)
Name: NF9567_low_15
Description: NF9567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9567_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 103 - 296
Target Start/End: Complemental strand, 1135065 - 1134872
Alignment:
| Q |
103 |
aaaatggaaccaaaatggagcaccattctgccagcaacctccatattctccagcttcgatgacctcaaatggatcacagcagaatttgatcatgaacttt |
202 |
Q |
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| T |
1135065 |
aaaatggaaccaaaatggagcaccattctgccagcaacctccatattctccagcttcgatgacctcaaatggatcacagcagaatttgatcatgaacttt |
1134966 |
T |
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| Q |
203 |
tcaccaagcggcccgttaccgtcgaaacagcaatcgacgacaacgatgtaaaaccgtctaaggtggatccattcctcggtgtcggcgatgtttg |
296 |
Q |
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| T |
1134965 |
tcaccaagcggcccgttaccgtcgaaacagcaatcgacgacaacgatgtaaaaccgtctaaggtggatccattcctcggtgtcggcgatgtttg |
1134872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1135166 - 1135124
Alignment:
| Q |
1 |
catctaatgtttcaaattttgcctatttataggcacgaagcag |
43 |
Q |
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| T |
1135166 |
catctaatgtttcaaattttgcctatttataggcacgaagcag |
1135124 |
T |
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