View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9567_low_17 (Length: 287)
Name: NF9567_low_17
Description: NF9567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9567_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 21777749 - 21778008
Alignment:
| Q |
1 |
tttgtcgttttcaatttgtttagattttatcatcattttctaattttgtacaatgatgtatttagtaggggttggaaaaacgacgaaaatttataataca |
100 |
Q |
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| T |
21777749 |
tttgtcgttttcaatttgtttagattttatcatcattttctaattttgtacaatgatgtatttagtaggggttggaaaaacgacgaaaatttataataca |
21777848 |
T |
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| Q |
101 |
gagaaactagcagttatag-nnnnnnnnnactgatagttacagttttttacttccaaaataaaattaaaattatataattttg-gtttttagtgaaaatt |
198 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
21777849 |
gagaaactagcacttatagttttttttttactgatagttacagttttttatttctaaaataaaattaaaattatataattttgtttttttagtgagaatt |
21777948 |
T |
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| Q |
199 |
atggatagtggtagtttgatttatttgtttttattggtcctctcgtactaagcaatattt |
258 |
Q |
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| T |
21777949 |
atggatagtggtagtgtgatttatttgtttttattggtcctctcgtactaagcaatattt |
21778008 |
T |
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