View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9567_low_18 (Length: 255)
Name: NF9567_low_18
Description: NF9567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9567_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 44471538 - 44471788
Alignment:
| Q |
1 |
tctaattactgtttgtttttaccagctaataactgttttaatacggaagaaaaactaagaaataaacaaatctctttaaaaaaga---tgaataatcaag |
97 |
Q |
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| T |
44471538 |
tctaattactgtttgtttttaccagctaataactgttttaatacggaagaaaaactaagaaataaacaaatttctttaaaaaatatattgaatgatcaag |
44471637 |
T |
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| Q |
98 |
ttacannnnnnnatgagatttacattagtctcttacactgtccacnnnnnnnnnnncttagtctattacactacatatatatagagactaattttagtta |
197 |
Q |
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| T |
44471638 |
ttacatttttttatgagatttacattagtctcttacactgtccacaaaaaaaaaaacttagtctcttacactac----atatagagactaattttagtta |
44471733 |
T |
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| Q |
198 |
attgcatagaactataatattttaatataacaaattctagtatctctgcttctcc |
252 |
Q |
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| T |
44471734 |
attgcatagaactataatattttaatataacaaattctagtatctcttcttctcc |
44471788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 44476305 - 44476363
Alignment:
| Q |
184 |
actaattttagttaattgcatagaactataata-ttttaatataacaaattctagtatc |
241 |
Q |
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| T |
44476305 |
actaattttagttaattgcatagaactagaatatttttaatataacaaattttagtatc |
44476363 |
T |
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