View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9567_low_23 (Length: 244)
Name: NF9567_low_23
Description: NF9567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9567_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 44471314 - 44471533
Alignment:
| Q |
22 |
agaccgccatcgtataccaccgtgactaccctcccatcaccttcaacttcgactctttccttccttcaggtgttccctttggcgtcaattattgcgaaca |
121 |
Q |
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| T |
44471314 |
agaccgccatcgtataccaccgtgactaccctcctatcaccttcaacttcgactctttccttccttcaggtggtccctttggcgtcaattattgcgaaca |
44471413 |
T |
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| Q |
122 |
ctattaattactggaatcaattaatatgcttattatatttcgtcaaagatcaaatgtcaagaagcatatagaagcagcgtaatacgtattagggctagct |
221 |
Q |
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| T |
44471414 |
ctattaattactagaattaattaatatgcttattatatttcgtcaaagatcaaatgtcaagaagcatatagaagcagtgtaatacgtattagggctagct |
44471513 |
T |
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| Q |
222 |
aggtaggctcaaataaggtt |
241 |
Q |
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| T |
44471514 |
aggtaggctcgaataaggtt |
44471533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 44476099 - 44476159
Alignment:
| Q |
178 |
tcaagaagcatatagaagcagcgtaatacgtattagggctagctaggtaggctcaaataag |
238 |
Q |
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|||| |||||||||||| | || ||||||||||||||||||||||||| |||||||||||| |
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| T |
44476099 |
tcaataagcatatagaaaccgcataatacgtattagggctagctaggttggctcaaataag |
44476159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 44485860 - 44485908
Alignment:
| Q |
146 |
tatgcttattatatttcgtcaaagatcaaat-gtcaagaagcatataga |
193 |
Q |
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| T |
44485860 |
tatgcatattatattttgtcaaagatcaaatcgtccagaagcatataga |
44485908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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