View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9567_low_27 (Length: 237)
Name: NF9567_low_27
Description: NF9567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9567_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 20631030 - 20631170
Alignment:
| Q |
1 |
cttctcaaaacccccaaatctcagtaaacatgccaaagtttgtgcagagaattcaaataggacccaaaaaacatttttgggaaaaaagtagagggtgaaa |
100 |
Q |
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| T |
20631030 |
cttctcataacccccaaatctcagtaaacatgccaaagtttgtgcagagaattcaaataggacccaaaaaacatttttgggaagaaagtagagggtgaaa |
20631129 |
T |
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| Q |
101 |
atactctttcttttgaagttaatcaataagactacataata |
141 |
Q |
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| T |
20631130 |
atactctttcttttgaagttaatcaataagactacgtaata |
20631170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 20631190 - 20631298
Alignment:
| Q |
114 |
tgaagttaatcaataagactacataatatcttgttagatgattttttattgtttgtcaactatcaaatagagcatttgattaatgatacatggacctcaa |
213 |
Q |
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| T |
20631190 |
tgaagttaatcaacaagactacataatatcttgttagatgattttttattgtttgtcaactatcaaatagagcaattgattaatgatacatggacctcaa |
20631289 |
T |
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| Q |
214 |
ttcataata |
222 |
Q |
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| T |
20631290 |
ttcataata |
20631298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 20608184 - 20608252
Alignment:
| Q |
155 |
ttttttattgtttgtcaactatcaaatagagcatttgattaatgatacatggacctcaattcataatac |
223 |
Q |
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| T |
20608184 |
ttttgtattgtttgtcaactatcaaatagagcaattgattaatgatacatggacctcaatttataatac |
20608252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 20607821 - 20607970
Alignment:
| Q |
4 |
ctcaaaacccccaaatctcagtaaacatgccaaagtttgtgcagagaattcaaataggacccaaaaaacattt---ttgggaaaaaagtagagggtgaaa |
100 |
Q |
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| T |
20607821 |
ctcaaaagccctaaatctcagtaaacatactaaagtttgcgcagagaattcaaatagga-cagaaaaacattttacttgggaagcaagtaaagggtgaaa |
20607919 |
T |
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| Q |
101 |
atactctttc---------ttttgaagttaatcaataagactacataatat |
142 |
Q |
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| T |
20607920 |
atactatttctctcaagtttgttgaagttaatcaataagactacataatat |
20607970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 20607986 - 20608023
Alignment:
| Q |
111 |
ttttgaagttaatcaataagactacataatatcttgtt |
148 |
Q |
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| T |
20607986 |
ttttgaagttaaccaataagaatacataatatcttgtt |
20608023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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