View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9567_low_34 (Length: 219)
Name: NF9567_low_34
Description: NF9567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9567_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 5712617 - 5712817
Alignment:
| Q |
1 |
gtcctatgtgccatatgcttattttcattttcttccacttgtaagtggtgtgggtgttggttgacctttacatgaccactgacttattttgggggagctc |
100 |
Q |
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| T |
5712617 |
gtcctatgtgccatatgcttattttcattttcttccacttgtaagtggtgtgggtgttggttgacctttacatgaccactgacttattttgggggagctc |
5712716 |
T |
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| Q |
101 |
aatacaccatgtcatctagcacctttgcatccctatttaggggttttaacataatgatcatgattcatgagatcatcaattcaatattttgatgccatct |
200 |
Q |
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| T |
5712717 |
aatacaccatgtcatctagcacctttgcatccctatttaggggtcttaacataatgatcatgattcatgagatcatcaattcaatattttgatgccatct |
5712816 |
T |
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| Q |
201 |
c |
201 |
Q |
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| T |
5712817 |
c |
5712817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 5713847 - 5714003
Alignment:
| Q |
1 |
gtcctatgtgccatatgcttattttcattttcttccacttgtaagtggtgtgggtgttggttgacctttacatgaccactgacttattttgggggagctc |
100 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||||||||| |||||||||||| || ||||||| |
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| T |
5713847 |
gtcctatgtgccatattctttccttcattttcttccacttgttagtgttgtgggtgttggttgacc-----------actgacttatttaggaggagctc |
5713935 |
T |
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| Q |
101 |
aatacaccatgtcatctagcacctttgcatccctatttaggggttttaacataatgatcatgattcatg |
169 |
Q |
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|| | ||||||||||||| ||||||| |||||||| || |||| ||||| |||| ||||||||||||| |
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| T |
5713936 |
aa-ataccatgtcatctaccaccttttcatccctactttagggtcttaacctaataatcatgattcatg |
5714003 |
T |
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