View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9567_low_4 (Length: 492)
Name: NF9567_low_4
Description: NF9567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9567_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 24926400 - 24926859
Alignment:
| Q |
18 |
tggacgcataggtggattggaggattaccgctttgtgtgcggtttcctagattatttgatttagctgagaacaaaaatgccacaatggctgacatgttca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24926400 |
tggacgcataggtggattggaggattaccgctttgtgtgcggtttcctagattatttgatttagctgagaacaaaaatgccacaatggctgacatgttct |
24926499 |
T |
|
| Q |
118 |
ctcttggtctaagtcatggtggggatggttggagatggcgtcgaaggttcttccttgtctcttcaaggcatagacagtggtttattttttaattgatgat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24926500 |
ctcttggtctaagtcatggtggggatggttggagatggcgtcgaaggttcttccttgtctcttcaaggcatagacagtggtttattttttaattgatgat |
24926599 |
T |
|
| Q |
218 |
cgtgtgttgagtattgatatgtagtttattttttaagacgtcaacttcaaagtcttcacctctctcttctgtctagctagccctcaaacaaagccaaaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24926600 |
cgtgtgttgagtattgatatgtagtttattttttaagacgtcaacttcaaagtcttcacctctctcttctgtctagctagccctcaaacaaagccaaaat |
24926699 |
T |
|
| Q |
318 |
cagtattttgattctcttgtgagaatttctaccaatgattgcatttatgttggcataggattttaagtgtcaatttaatttaaattagacaaccttctca |
417 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24926700 |
cagtattttgattctcttgtgagaatttctaccaatgattgcatttatgttggtataggattttaagtgtcaatttaatttaaattagacaaccttctca |
24926799 |
T |
|
| Q |
418 |
attaaatatagaattttaaatgtcgattttattgataatttatcagtgcatcaacatatt |
477 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24926800 |
attaaatataggattttaaatgtcgattttattgataatttatcagtgcatcaacatatt |
24926859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 18368671 - 18368742
Alignment:
| Q |
22 |
cgcataggtggattggaggattaccgctttgtgtgcggtttcctagattatttgatttagctgagaacaaaa |
93 |
Q |
| |
|
||||||||||||||||| | | |||||||||||||| |||| | |||||||||| |||||||||||||||| |
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|
| T |
18368671 |
cgcataggtggattggaagttccccgctttgtgtgcgttttcttcgattatttgacttagctgagaacaaaa |
18368742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 15481473 - 15481544
Alignment:
| Q |
22 |
cgcataggtggattggaggattaccgctttgtgtgcggtttcctagattatttgatttagctgagaacaaaa |
93 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||||||||||||| | || ||||| ||||| |||||||||| |
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|
| T |
15481473 |
cgcataggtggtttggaggtccaccgctttttgtgcggtttcctcgtttgtttgacttagcagagaacaaaa |
15481544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 36709334 - 36709263
Alignment:
| Q |
22 |
cgcataggtggattggaggattaccgctttgtgtgcggtttcctagattatttgatttagctgagaacaaaa |
93 |
Q |
| |
|
||||||||||||||||||| | ||||| ||||||| ||||||| | || ||||| ||||| |||||||||| |
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|
| T |
36709334 |
cgcataggtggattggaggttccccgctgtgtgtgcagtttcctcgcttgtttgacttagcagagaacaaaa |
36709263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 36804555 - 36804407
Alignment:
| Q |
18 |
tggacgcataggtggattggaggattaccgctttgtgtgcggtttcctagattatttgatttagctgagaacaaaaatgccacaatggctgacatgttca |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |
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|
| T |
36804555 |
tggacgcataggtggattggaggtttaccgctttgtgcgcggtttcctagattatttgatttagctgagaacaaaaatgccacagtggcagctatgttct |
36804456 |
T |
|
| Q |
118 |
ctcttggtctaagtcatggtggggatggttggagatggcgtcgaaggtt |
166 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36804455 |
ctcgtggtctaagtcatggtggggatggttggagatggcgtcgaaggtt |
36804407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 36804294 - 36804192
Alignment:
| Q |
64 |
ctagattatttgatttagctgagaacaaaaatgccacaatggctgacatgttcactcttggtctaagtcatggtggggatggttggagatggcgtcgaag |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36804294 |
ctagattatttgatttagctgagaacaaaaatgccacagtggctgctatgttctctcgtggtctaagtcatggtggggatggttggagatggcgtcgaag |
36804195 |
T |
|
| Q |
164 |
gtt |
166 |
Q |
| |
|
||| |
|
|
| T |
36804194 |
gtt |
36804192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 12134756 - 12134645
Alignment:
| Q |
18 |
tggacgcataggtggattg-gaggattaccgctttgtgtgcggtttcctagattatttgatttagctgagaacaaaaatgccacaatggctgacatgttc |
116 |
Q |
| |
|
||||||||||||||||||| || | ||||| |||||||||||||||||| | |||||||| ||| || | ||||||| ||||| |||||||||||||| |
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|
| T |
12134756 |
tggacgcataggtggattgtgatg-ttacctctttgtgtgcggtttcctcgtttatttgacttaactaaaaacaaaaccgccactgtggctgacatgttc |
12134658 |
T |
|
| Q |
117 |
actcttggtctaa |
129 |
Q |
| |
|
|||||||||||| |
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|
| T |
12134657 |
tctcttggtctaa |
12134645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 18671594 - 18671523
Alignment:
| Q |
22 |
cgcataggtggattggaggattaccgctttgtgtgcggtttcctagattatttgatttagctgagaacaaaa |
93 |
Q |
| |
|
||||||||||||| ||||| | ||||||||||||||||||||| | |||||||| |||||||||||||||| |
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|
| T |
18671594 |
cgcataggtggatcggaggttccccgctttgtgtgcggtttcctcgtttatttgacttagctgagaacaaaa |
18671523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 5327199 - 5327059
Alignment:
| Q |
18 |
tggacgcataggtggattggaggattacc-gctttgtgtgcggtttcctagattatttgatttagctgagaacaaaaatgccacaatggctgacatgttc |
116 |
Q |
| |
|
||||| |||||||||||||| || || || | |||| |||| ||||||| | ||||||| |||||||||||||||||||||||| ||||| | ||||| |
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|
| T |
5327199 |
tggactcataggtggattggggggttccccgttttgcgtgcagtttcctcggttatttgcattagctgagaacaaaaatgccacagtggctaatttgttc |
5327100 |
T |
|
| Q |
117 |
actcttggtctaagtcatggtggggatggttggagatggcg |
157 |
Q |
| |
|
| |||||||| | ||||||||||| || ||||| ||||| |
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|
| T |
5327099 |
tcccttggtcttatgcatggtggggaggggtggaggtggcg |
5327059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 41339953 - 41339814
Alignment:
| Q |
18 |
tggacgcataggtggattggaggattaccgctttgtgtgcggtttcctagattatttgatttagctgagaacaaaaatgccacaatggctgacatgttca |
117 |
Q |
| |
|
||||| |||||||||||||| || | | |||||| |||| ||||||| | |||||| |||| ||||||||||||||||||| ||||| | ||||| |
|
|
| T |
41339953 |
tggactcataggtggattgggggttccctgctttgcgtgcagtttcctcggttatttacgttagttgagaacaaaaatgccacagtggctaatttgttct |
41339854 |
T |
|
| Q |
118 |
ctcttggtctaagtcatggtggggatggttggagatggcg |
157 |
Q |
| |
|
| |||||||| | ||||||||||| || ||||| ||||| |
|
|
| T |
41339853 |
cccttggtcttatgcatggtggggaggggtggaggtggcg |
41339814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 34457874 - 34457945
Alignment:
| Q |
22 |
cgcataggtggattggaggattaccgctttgtgtgcggtttcctagattatttgatttagctgagaacaaaa |
93 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||| ||||| | || ||||| ||||| |||||||||| |
|
|
| T |
34457874 |
cgcataggtggattggaggttctccgctttgtgtgcgatttccccgcttgtttgacttagcagagaacaaaa |
34457945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 9565791 - 9565720
Alignment:
| Q |
22 |
cgcataggtggattggaggattaccgctttgtgtgcggtttcctagattatttgatttagctgagaacaaaa |
93 |
Q |
| |
|
|||||||||||||||| || | |||||||||||||| ||| || | |||||||| |||||||||||||||| |
|
|
| T |
9565791 |
cgcataggtggattggtggttccccgctttgtgtgcgattttctcggttatttgacttagctgagaacaaaa |
9565720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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