View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9567_low_7 (Length: 389)
Name: NF9567_low_7
Description: NF9567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9567_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 8177574 - 8177207
Alignment:
| Q |
1 |
aaatttcctcttataatttttggacttattgcatagataagctacatccttaaagcatcgcttttgcaaaaacaaaagtggtttggttttatatatgacg |
100 |
Q |
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| T |
8177574 |
aaatttcctcttataatttttggatttattgcatagat----tacattcttaaagcatcgcttttgcaaaaacaaaagtggtttggttt-atatatggca |
8177480 |
T |
|
| Q |
101 |
ataataaatccatcaaggatcactatccgagcattcaaggaaagtgacatagatgatgtgttattatggctaggagatgaaagagtaattgaggatactc |
200 |
Q |
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| T |
8177479 |
ataataaatccatcaaggatcactattcgagcattcaaggaaagtgacatagatgatgtgttattatggctaggagatgaaagagtaattgaggatactc |
8177380 |
T |
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| Q |
201 |
gattggaaacttgtaattcaaagaaagaaggtttggatttcataaaaaatgaatgcatttacccaatccgccaatcaatatgtcttgatgaccactccat |
300 |
Q |
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| T |
8177379 |
gattggaaacttgtaattcaaagaaagaagctttggatttcataaaaaatgaatgcatttacccaatccgccaatcaatatgtcttgatgaccactccat |
8177280 |
T |
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| Q |
301 |
tggaatggtttggattcttcctcatgctaatgatgagaagtataaagcagatatgggttatgctattggattc |
373 |
Q |
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| T |
8177279 |
tggaatggtttggattcttcctcatgctaatgatgagaaatataaagcagatatgggttatgctattggattc |
8177207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 311
Target Start/End: Complemental strand, 8169756 - 8169682
Alignment:
| Q |
237 |
atttcataaaaaatgaatgcatttacccaatccgccaatcaatatgtcttgatgaccactccattggaatggttt |
311 |
Q |
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| T |
8169756 |
atttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgttt |
8169682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 8172392 - 8172313
Alignment:
| Q |
232 |
tttggatttcataaaaaatgaatgcatttacccaatccgccaatcaatatgtcttgatgaccactccattggaatggttt |
311 |
Q |
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|||| |||||||||| || || || ||||||||| ||| |||||||||||||||||||| ||||| |||||||| |||| |
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| T |
8172392 |
tttgaatttcataaagaaagattgtatttacccattccaacaatcaatatgtcttgatgatcactctattggaattgttt |
8172313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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