View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9568_high_5 (Length: 324)
Name: NF9568_high_5
Description: NF9568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9568_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 8e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 7 - 189
Target Start/End: Original strand, 39841437 - 39841619
Alignment:
| Q |
7 |
agtgcaattccaagtccccaaagtttatagaatatagtaattccaatcaatagaaaccaaaaaacagagtataataattacagaaatcaatttaaatctt |
106 |
Q |
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| T |
39841437 |
agtgcaattccaagtccccaaagtttatagaatatagtaattccaatcaatagaaaccaaaaaacagagtataataattacagaaatcaatttaaatctt |
39841536 |
T |
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| Q |
107 |
caaatatctaacaaaatcaagaaagctcagtattattattataaatataattagaatcatttcgcatatacatatgcttcagc |
189 |
Q |
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| T |
39841537 |
caaatatctaacaaaatcaagatagcttagtattattattataaatataattagaatcatttcgcatatacatatgtttcagc |
39841619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 7 - 189
Target Start/End: Complemental strand, 39730582 - 39730409
Alignment:
| Q |
7 |
agtgcaattccaagtccccaaagtttatagaatatagtaattccaatcaatagaaaccaaaaaacagagtataataattacagaaatcaatttaaatctt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39730582 |
agtgcaattccaagtccccaaagtttatagaatata---attccaatcaatagaaaccaaaaaacagagtataataga-acagaaatcaatttaaatctt |
39730487 |
T |
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| Q |
107 |
caaatatctaacaaaatcaagaaagctcagtattattattataaatataattagaatcatttcgcatatacatatgcttcagc |
189 |
Q |
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| T |
39730486 |
caaatatctaataaaatcaagaaatcttagaat-----atataaatataatcagaatcatttctcatatacatatgcttcagc |
39730409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 237 - 311
Target Start/End: Complemental strand, 39720437 - 39720363
Alignment:
| Q |
237 |
aataccgtttcgcggcagaggctgaggaacgaggagtgcagcggatcagcttgttggtgatacgcgtgagggtct |
311 |
Q |
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| T |
39720437 |
aataccgtttcgcggcagaggctgtggaacgaggagtgcagcggatcagcttgttggtgatacgcgtgagggtct |
39720363 |
T |
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