View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9568_low_1 (Length: 496)

Name: NF9568_low_1
Description: NF9568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9568_low_1
NF9568_low_1
[»] chr3 (31 HSPs)
chr3 (239-481)||(55032537-55032778)
chr3 (239-349)||(55035532-55035642)
chr3 (396-481)||(6445417-6445502)
chr3 (415-488)||(17532492-17532565)
chr3 (396-475)||(9392053-9392132)
chr3 (415-486)||(53815126-53815197)
chr3 (401-481)||(28265160-28265240)
chr3 (415-483)||(35411834-35411902)
chr3 (415-481)||(23299328-23299394)
chr3 (416-481)||(52198464-52198529)
chr3 (420-488)||(54736631-54736699)
chr3 (415-481)||(6922049-6922115)
chr3 (418-488)||(16185434-16185504)
chr3 (418-488)||(18645519-18645589)
chr3 (415-486)||(54460531-54460601)
chr3 (418-480)||(538175-538237)
chr3 (18-80)||(9154414-9154476)
chr3 (418-488)||(10884170-10884240)
chr3 (20-80)||(42354869-42354930)
chr3 (420-471)||(8462338-8462389)
chr3 (16-104)||(17529180-17529269)
chr3 (17-80)||(36037421-36037484)
chr3 (18-80)||(538582-538644)
chr3 (418-480)||(10107405-10107467)
chr3 (16-104)||(17532064-17532153)
chr3 (20-80)||(2280077-2280137)
chr3 (193-236)||(55032462-55032506)
chr3 (408-471)||(17537515-17537578)
chr3 (17-66)||(30158497-30158546)
chr3 (407-471)||(10880946-10881010)
chr3 (407-471)||(31548721-31548785)
[»] chr6 (15 HSPs)
chr6 (239-488)||(5738789-5739037)
chr6 (239-350)||(1126444-1126556)
chr6 (415-480)||(9953196-9953261)
chr6 (418-488)||(2371565-2371635)
chr6 (18-80)||(23388545-23388607)
chr6 (18-80)||(9953583-9953645)
chr6 (418-488)||(34501566-34501636)
chr6 (415-481)||(23379588-23379654)
chr6 (415-481)||(23388927-23388993)
chr6 (17-80)||(1126174-1126237)
chr6 (17-63)||(5738529-5738575)
chr6 (17-63)||(11410379-11410425)
chr6 (38-80)||(13096113-13096155)
chr6 (17-54)||(2371988-2372025)
chr6 (407-471)||(28665939-28666003)
[»] chr8 (23 HSPs)
chr8 (239-488)||(5540587-5540843)
chr8 (338-471)||(23612748-23612880)
chr8 (396-481)||(17895273-17895358)
chr8 (415-481)||(25595459-25595525)
chr8 (415-480)||(33878013-33878078)
chr8 (415-481)||(25592274-25592340)
chr8 (401-480)||(10663171-10663250)
chr8 (415-481)||(18722085-18722151)
chr8 (18-80)||(25595103-25595165)
chr8 (418-483)||(43682575-43682640)
chr8 (415-488)||(45156693-45156766)
chr8 (419-483)||(20520109-20520173)
chr8 (18-80)||(18721727-18721789)
chr8 (18-75)||(25591919-25591976)
chr8 (418-481)||(25228171-25228234)
chr8 (18-75)||(23613157-23613214)
chr8 (17-80)||(18696385-18696448)
chr8 (17-80)||(31984593-31984656)
chr8 (17-76)||(5963855-5963914)
chr8 (17-48)||(30645103-30645134)
chr8 (17-80)||(31980958-31981021)
chr8 (17-102)||(45155715-45155799)
chr8 (415-464)||(30640685-30640734)
[»] scaffold0080 (2 HSPs)
scaffold0080 (18-177)||(26706-26865)
scaffold0080 (418-488)||(26397-26467)
[»] chr5 (24 HSPs)
chr5 (24-186)||(39191934-39192096)
chr5 (366-481)||(22937785-22937896)
chr5 (419-486)||(28788179-28788246)
chr5 (418-488)||(32837235-32837305)
chr5 (416-488)||(21336497-21336569)
chr5 (416-483)||(21827796-21827863)
chr5 (415-488)||(37214918-37214991)
chr5 (407-471)||(40916654-40916718)
chr5 (416-471)||(21333481-21333536)
chr5 (415-483)||(39191488-39191556)
chr5 (423-488)||(14376638-14376702)
chr5 (418-481)||(42061645-42061708)
chr5 (418-488)||(43490945-43491015)
chr5 (420-481)||(31863031-31863092)
chr5 (420-488)||(28441961-28442029)
chr5 (17-63)||(22937382-22937428)
chr5 (17-103)||(28441579-28441664)
chr5 (17-60)||(21333126-21333169)
chr5 (17-60)||(21336142-21336185)
chr5 (17-76)||(26547692-26547751)
chr5 (17-76)||(26551251-26551310)
chr5 (17-71)||(3194805-3194859)
chr5 (17-71)||(34653211-34653265)
chr5 (407-471)||(7270399-7270463)
[»] chr4 (30 HSPs)
chr4 (396-488)||(19861043-19861135)
chr4 (407-479)||(33410729-33410801)
chr4 (366-481)||(40617542-40617653)
chr4 (415-483)||(3798571-3798639)
chr4 (407-471)||(27013399-27013463)
chr4 (415-488)||(15431316-15431389)
chr4 (415-488)||(15437930-15438003)
chr4 (407-488)||(19865410-19865491)
chr4 (403-488)||(53093873-53093957)
chr4 (418-488)||(37104039-37104109)
chr4 (414-483)||(12237511-12237580)
chr4 (420-480)||(5669788-5669848)
chr4 (418-481)||(18910763-18910826)
chr4 (418-488)||(5721749-5721819)
chr4 (418-488)||(9717103-9717173)
chr4 (414-480)||(49269895-49269960)
chr4 (415-488)||(5680621-5680694)
chr4 (17-80)||(11703043-11703106)
chr4 (17-105)||(37103660-37103748)
chr4 (17-80)||(33400776-33400839)
chr4 (16-63)||(40617138-40617185)
chr4 (407-471)||(48014707-48014771)
chr4 (17-63)||(5681060-5681106)
chr4 (17-63)||(19864931-19864977)
chr4 (17-63)||(27013894-27013940)
chr4 (30-80)||(33410402-33410452)
chr4 (17-77)||(7642771-7642831)
chr4 (407-471)||(12782286-12782350)
chr4 (407-471)||(19820111-19820175)
chr4 (407-471)||(19826872-19826936)
[»] chr2 (20 HSPs)
chr2 (415-486)||(10600117-10600188)
chr2 (415-488)||(25873355-25873428)
chr2 (415-488)||(38006061-38006134)
chr2 (401-481)||(25139801-25139881)
chr2 (415-483)||(25821692-25821760)
chr2 (415-488)||(36809210-36809283)
chr2 (418-488)||(26358824-26358894)
chr2 (418-488)||(29439727-29439797)
chr2 (415-488)||(25869987-25870060)
chr2 (419-475)||(16788553-16788609)
chr2 (415-484)||(30275467-30275535)
chr2 (17-80)||(1507093-1507155)
chr2 (17-80)||(15704429-15704492)
chr2 (17-80)||(15719683-15719746)
chr2 (17-105)||(26365504-26365592)
chr2 (407-471)||(30925920-30925984)
chr2 (17-80)||(1503889-1503951)
chr2 (17-80)||(38005628-38005691)
chr2 (17-63)||(29435365-29435411)
chr2 (17-80)||(4577449-4577512)
[»] chr1 (10 HSPs)
chr1 (415-488)||(1951120-1951193)
chr1 (415-488)||(49499343-49499416)
chr1 (418-488)||(2793451-2793521)
chr1 (418-488)||(42021875-42021945)
chr1 (406-488)||(34733030-34733111)
chr1 (418-488)||(29644086-29644156)
chr1 (17-63)||(49715985-49716031)
chr1 (17-63)||(49719468-49719514)
chr1 (110-141)||(30604682-30604713)
chr1 (19-63)||(1950901-1950945)
[»] scaffold0381 (2 HSPs)
scaffold0381 (407-471)||(6320-6384)
scaffold0381 (17-63)||(5844-5890)
[»] scaffold0035 (1 HSPs)
scaffold0035 (414-481)||(61756-61823)
[»] chr7 (14 HSPs)
chr7 (415-486)||(45287912-45287983)
chr7 (415-486)||(45291248-45291319)
chr7 (418-481)||(8276171-8276234)
chr7 (418-481)||(26556669-26556732)
chr7 (418-488)||(10431538-10431608)
chr7 (415-488)||(4542226-4542298)
chr7 (418-488)||(2442056-2442125)
chr7 (406-457)||(13810180-13810231)
chr7 (20-80)||(22233094-22233154)
chr7 (20-80)||(22253585-22253645)
chr7 (17-76)||(11825816-11825875)
chr7 (24-75)||(44109034-44109085)
chr7 (407-471)||(17730185-17730249)
chr7 (20-60)||(22256875-22256915)
[»] scaffold0270 (3 HSPs)
scaffold0270 (415-482)||(834-901)
scaffold0270 (415-482)||(4194-4261)
scaffold0270 (415-482)||(11324-11391)
[»] scaffold0005 (1 HSPs)
scaffold0005 (418-488)||(291115-291185)
[»] scaffold0015 (1 HSPs)
scaffold0015 (418-488)||(197383-197453)
[»] scaffold0062 (2 HSPs)
scaffold0062 (17-80)||(53341-53404)
scaffold0062 (17-80)||(68240-68303)
[»] scaffold0014 (1 HSPs)
scaffold0014 (17-80)||(226951-227014)
[»] scaffold0214 (3 HSPs)
scaffold0214 (17-63)||(13222-13268)
scaffold0214 (17-63)||(27238-27284)
scaffold0214 (19-63)||(19672-19716)
[»] scaffold0009 (1 HSPs)
scaffold0009 (407-457)||(34989-35039)
[»] scaffold0360 (2 HSPs)
scaffold0360 (20-80)||(2078-2138)
scaffold0360 (24-75)||(5913-5963)
[»] scaffold0321 (1 HSPs)
scaffold0321 (418-470)||(3624-3676)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 239 - 481
Target Start/End: Original strand, 55032537 - 55032778
Alignment:
Q  239 aagcatgttatttacggtcaattccttagtccttctcattgatccatttagcacatcaatgcttggtttaaagcccaatcttcttttgattccagcgccc 338  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55032537 aagcatgttatttacggtcaactccttaatccttctcattgatccatttagcacatcaatgcttggtttaaagcccaatcttcttttgattccagcgccc 55032636  T
Q  339 ccaaactacttcttgtggtctattttccttttgtttaattcacaataccaaaataaataaatactttcaaattagggttcctaaaatcgtgtcacgaaat 438  Q
    |||||||||||| | |||||||||||||||||| |||||||||| |||||||| ||| |||||||||||||| |||||||||||||||||||||||||||    
T  55032637 ccaaactacttcctatggtctattttccttttgattaattcacactaccaaaa-aaaaaaatactttcaaatcagggttcctaaaatcgtgtcacgaaat 55032735  T
Q  439 agtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  55032736 agtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 55032778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 239 - 349
Target Start/End: Original strand, 55035532 - 55035642
Alignment:
Q  239 aagcatgttatttacggtcaattccttagtccttctcattgatccatttagcacatcaatgcttggtttaaagcccaatcttcttttgattccagcgccc 338  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  55035532 aagcatgttatttacggtcaactccttaatccttctcattgatccatttagcacatcaatgcttggtttaaagcccaatcttcttttgattccagcgctc 55035631  T
Q  339 ccaaactactt 349  Q
    |||||||||||    
T  55035632 ccaaactactt 55035642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 396 - 481
Target Start/End: Original strand, 6445417 - 6445502
Alignment:
Q  396 taaatactttcaaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    |||| |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  6445417 taaacacttacaaattagagttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 6445502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 415 - 488
Target Start/End: Original strand, 17532492 - 17532565
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||    
T  17532492 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatatcgaatgaacctcatcctgtgct 17532565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 396 - 475
Target Start/End: Complemental strand, 9392132 - 9392053
Alignment:
Q  396 taaatactttcaaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaac 475  Q
    |||| |||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  9392132 taaacactttcaaattaggattcttaaaatcgtgtcacgaaatagccatcgtgacacgttttagccaatgtcgaataaac 9392053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 415 - 486
Target Start/End: Complemental strand, 53815197 - 53815126
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatg 486  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||    
T  53815197 gttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcctatg 53815126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 401 - 481
Target Start/End: Complemental strand, 28265240 - 28265160
Alignment:
Q  401 actttcaaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    |||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| |||||    
T  28265240 acttacaaattagagttcctaaaatcgtgtcacgaaatagccaccgtgacacgttttaaccaatgtcgaatgaacttcatc 28265160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 415 - 483
Target Start/End: Complemental strand, 35411902 - 35411834
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcct 483  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||    
T  35411902 gttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcct 35411834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 415 - 481
Target Start/End: Original strand, 23299328 - 23299394
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||    
T  23299328 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaatcaatgtcgaatgaacctcatc 23299394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 416 - 481
Target Start/End: Complemental strand, 52198529 - 52198464
Alignment:
Q  416 ttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||    
T  52198529 ttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatc 52198464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 420 - 488
Target Start/End: Original strand, 54736631 - 54736699
Alignment:
Q  420 taaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||||||||||| |||||||||||||||||||||||  ||||| ||||||||||||||||    
T  54736631 taaaatcgtgtcacgaaatagacatcgtgacacgttttaaccaataccgaatgaacctcatcctatgct 54736699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 415 - 481
Target Start/End: Complemental strand, 6922115 - 6922049
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |||||||||    
T  6922115 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttcaccaatgttgaatgaacctcatc 6922049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 418 - 488
Target Start/End: Original strand, 16185434 - 16185504
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||| | ||||||||||| ||||    
T  16185434 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttagccaatgtcgagtgaacctcatcctgtgct 16185504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 418 - 488
Target Start/End: Original strand, 18645519 - 18645589
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  18645519 cctaaaatcgtgtcacgaaatagctatcgtgacacgatttaaccaatgtcgaatgaacctcatcctgtgct 18645589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 415 - 486
Target Start/End: Complemental strand, 54460601 - 54460531
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatg 486  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||| | |||| || |||||||||||    
T  54460601 gttcttaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatcttgaatgaa-ctcatcctatg 54460531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 480
Target Start/End: Complemental strand, 538237 - 538175
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcat 480  Q
    ||||||||||||||||||||||  |||||| ||||||||||||||||||||||| ||| ||||    
T  538237 cctaaaatcgtgtcacgaaataaccatcgtaacacgttttaaccaatgtcgaatgaacttcat 538175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 9154476 - 9154414
Alignment:
Q  18 ataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    |||||||||||||||||| |||||||| |||| |||| ||||| |||||||||||||||||||    
T  9154476 ataaacaacatagtaaaaaaaataaacagataaagttccgtcgatgtcgacgttgctcctcaa 9154414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 10884240 - 10884170
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||||||||||| | |||| ||||||||||||| ||||||||||| ||||| ||||| ||||    
T  10884240 cctaaaatcgtgtcacgaaatggccatcatgacacgttttaatcaatgtcgaatgaacctaatcctgtgct 10884170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 42354869 - 42354930
Alignment:
Q  20 aaacaacatagtaaaagaaa-taaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    |||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||||||||||    
T  42354869 aaacaacatagtaaaaaaaaataaaccgatagagtttcgtcgatgtcggcgttgctcctcaa 42354930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 471
Target Start/End: Original strand, 8462338 - 8462389
Alignment:
Q  420 taaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaat 471  Q
    ||||||||||||||||||||| |||||||| ||||||||| |||||||||||    
T  8462338 taaaatcgtgtcacgaaatagccatcgtgatacgttttaatcaatgtcgaat 8462389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 17529180 - 17529269
Alignment:
Q  16 caataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaaattaattc-caatcgctactgttga 104  Q
    |||||||||||||||||||  || |||||||| |||||| | ||||||||| ||||||||||||| ||  |||  |||||||||||||||    
T  17529180 caataaacaacatagtaaagcaagtaaaccgaaagagttacatcgttgtcggcgttgctcctcaagtttcttcttaatcgctactgttga 17529269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 36037421 - 36037484
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    ||||||||||||| ||||  ||||||| ||||||||||||| |||||||| |||||||| ||||    
T  36037421 aataaacaacataataaagaaaataaatcgatagagtttcgacgttgtcggcgttgctcatcaa 36037484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 538644 - 538582
Alignment:
Q  18 ataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    ||||| || ||||||||  |||||||||| ||||||||||||||| || ||||||||||||||    
T  538644 ataaaaaatatagtaaataaaataaaccgttagagtttcgtcgttttctacgttgctcctcaa 538582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 480
Target Start/End: Original strand, 10107405 - 10107467
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcat 480  Q
    ||||||||||||||||||||||  |||||| || |||||||||||||||| ||| ||| ||||    
T  10107405 cctaaaatcgtgtcacgaaataaccatcgtaacgcgttttaaccaatgtcaaattaacttcat 10107467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 17532064 - 17532153
Alignment:
Q  16 caataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaaattaattc-caatcgctactgttga 104  Q
    |||||| ||||||||||||  ||||||| ||| |||||| ||||||||||| | ||||||||||| ||  |||  |||||||||||||||    
T  17532064 caataagcaacatagtaaagaaaataaagcgaaagagttccgtcgttgtcggcattgctcctcaagtttcttcttaatcgctactgttga 17532153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 2280077 - 2280137
Alignment:
Q  20 aaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    ||||||||| |||||  ||||||||||||||| || |||||||| || |||||||||||||    
T  2280077 aaacaacattgtaaagaaaataaaccgatagaattccgtcgttgccggcgttgctcctcaa 2280137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 55032462 - 55032506
Alignment:
Q  193 gtatatccaagagtgacgcctgctagctttc-ttatataggtcat 236  Q
    |||||||||||||||| |||||||||||||| |||||||||||||    
T  55032462 gtatatccaagagtgatgcctgctagctttctttatataggtcat 55032506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 471
Target Start/End: Complemental strand, 17537578 - 17537515
Alignment:
Q  408 aattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaat 471  Q
    |||||||||| || ||||||||||||||||| || | ||||||||||||| | |||| ||||||    
T  17537578 aattagggtttctcaaatcgtgtcacgaaatggtaaccgtgacacgttttcatcaatatcgaat 17537515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 30158497 - 30158546
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcg 66  Q
    ||||||||||||| ||||  |||||||||||||||||| | |||||||||    
T  30158497 aataaacaacataataaagaaaataaaccgatagagttccatcgttgtcg 30158546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 471
Target Start/End: Complemental strand, 10881010 - 10880946
Alignment:
Q  407 aaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaat 471  Q
    ||||||||||| | | ||||||||||||   | | |||||||||||||||| |||||||||||||    
T  10881010 aaattagggtttccataatcgtgtcacgtttttgccatcgtgacacgttttcaccaatgtcgaat 10880946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 471
Target Start/End: Complemental strand, 31548785 - 31548721
Alignment:
Q  407 aaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaat 471  Q
    ||||||||||| | | ||||||||||||   | | |||||||||||||||| |||||||||||||    
T  31548785 aaattagggtttccataatcgtgtcacgtttttgccatcgtgacacgttttcaccaatgtcgaat 31548721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 239 - 488
Target Start/End: Original strand, 5738789 - 5739037
Alignment:
Q  239 aagcatgttatttacgg-tcaattccttagtccttctcattgatccatttagcacatcaatgcttggtttaaagcccaatcttcttttgattccagcgcc 337  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5738789 aagcatgttatttacgggtcaactccttaatccttctcattgatccatttagcacatcaatgcttggtttaaagcccaatcttcttttgattccagcgcc 5738888  T
Q  338 cccaaactacttcttgtggtctattttccttttgtttaattcacaataccaaaataaataaatactttcaaattagggttcctaaaatcgtgtcacgaaa 437  Q
    |||| |||||||| ||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  5738889 cccatactacttcatgtggtctattttccttttgtttaattcacactaccaaa--aaataaatactttcaaattagggttcctaaaatcgtgtcacgaaa 5738986  T
Q  438 tagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||| ||||||||| |||||||||||||||||||| ||||||||||| ||||    
T  5738987 tagccatcgtgacgcgttttaaccaatgtcgaatgaacctcatcctttgct 5739037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 239 - 350
Target Start/End: Original strand, 1126444 - 1126556
Alignment:
Q  239 aagcatgttatttacgg-tcaattccttagtccttctcattgatccatttagcacatcaatgcttggtttaaagcccaatcttcttttgattccagcgcc 337  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1126444 aagcatgttatttacgggtcaactccttaatccttctcattgatccatttagcacatcaatgcttggtttaaagcccaatcttcttttgattccagcgcc 1126543  T
Q  338 cccaaactacttc 350  Q
    |||| ||||||||    
T  1126544 cccatactacttc 1126556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 415 - 480
Target Start/End: Complemental strand, 9953261 - 9953196
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcat 480  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  9953261 gttcctaaaatcgtgtcacgaaatagctatcgtgacacgttttaaccaatgtcgaatgaacctcat 9953196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 2371635 - 2371565
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||| ||||    
T  2371635 cctaaaatcgtgtcacgaaatagccatcatgacacgttttaaccaatgtcgaatgaacctcgtcctgtgct 2371565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 23388545 - 23388607
Alignment:
Q  18 ataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||    
T  23388545 ataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgtcggcgttgctcctcaa 23388607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 9953645 - 9953583
Alignment:
Q  18 ataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||||||| |||||||||||||    
T  9953645 ataaacaacataataaaaaaaataagccgatagagtttcgtcgttgtcggcgttgctcctcaa 9953583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 34501636 - 34501566
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||||||| |||||| ||||||| ||||||||||||||||| | |||||||||| ||||||||||||||||    
T  34501636 cctaaaattgtgtcatgaaatagccatcgtgacacgttttagctaatgtcgaatgaacctcatcctatgct 34501566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 481
Target Start/End: Original strand, 23379588 - 23379654
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    ||||||| ||||||||||||||||||  ||||||||||||||||| ||||||||| | |||||||||    
T  23379588 gttcctagaatcgtgtcacgaaatagctatcgtgacacgttttaatcaatgtcgagtgaacctcatc 23379654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 415 - 481
Target Start/End: Original strand, 23388927 - 23388993
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    ||||||| ||||||||||||||||||  ||||||||||||||||| ||||||||| | |||||||||    
T  23388927 gttcctagaatcgtgtcacgaaatagctatcgtgacacgttttaatcaatgtcgagtgaacctcatc 23388993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 1126174 - 1126237
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||| || | || ||||||||    
T  1126174 aataaacaacatagtaaaaacaataaaccgatagagttccgtcgttgccggctttactcctcaa 1126237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 5738529 - 5738575
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttg 63  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||||    
T  5738529 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 5738575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 11410425 - 11410379
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttg 63  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||||    
T  11410425 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 11410379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 13096113 - 13096155
Alignment:
Q  38 aataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    |||||||||||||||||||||||||||||  ||||||| ||||    
T  13096113 aataaaccgatagagtttcgtcgttgtcggtgttgctcttcaa 13096155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 2372025 - 2371988
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtt 54  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  2372025 aataaacagcatagtaaaaaaaataaaccgatagagtt 2371988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 471
Target Start/End: Original strand, 28665939 - 28666003
Alignment:
Q  407 aaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaat 471  Q
    ||||||||||| | | ||||||||||||   | | |||||||||||||||| |||||||||||||    
T  28665939 aaattagggtttccataatcgtgtcacgtttttgccatcgtgacacgttttcaccaatgtcgaat 28666003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 239 - 488
Target Start/End: Original strand, 5540587 - 5540843
Alignment:
Q  239 aagcatgttatttacggtcaattccttagtccttctcattgatccatttagcacatcaatgcttggtttaaagcccaatcttcttttgattccagcgccc 338  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5540587 aagcatgttatttacggtcaactccttaatccttctcattgatccatttagcacatcaatgcttggtttaaagcccaatcttcttttgattccagcgccc 5540686  T
Q  339 ccaaactacttcttgtggtctattttccttttgtttaattcacaataccaaaata--------aataaatactttcaaattagggttcctaaaatcgtgt 430  Q
    ||||||||  || ||||||||||||||||||||||||||||||| |||||||| |        ||||||||||||||||||| ||||||||||||| |||    
T  5540687 ccaaactaactcctgtggtctattttccttttgtttaattcacactaccaaaaaaaaaaaaacaataaatactttcaaatta-ggttcctaaaatcatgt 5540785  T
Q  431 cacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  5540786 cacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 5540843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 338 - 471
Target Start/End: Complemental strand, 23612880 - 23612748
Alignment:
Q  338 cccaaactacttcttgtggtctattttccttttgtttaattcacaataccaaaataaataaatactttcaaattagggttcctaaaatcgtgtcacgaaa 437  Q
    |||| |||||||  |||||||| |||| |||||||||||||||||  | ||||| |||||||||||| |||| || ||||||||||||||||||||||||    
T  23612880 cccatactactttatgtggtctgtttttcttttgtttaattcacaccatcaaaa-aaataaatacttccaaactaaggttcctaaaatcgtgtcacgaaa 23612782  T
Q  438 tagtcatcgtgacacgttttaaccaatgtcgaat 471  Q
    ||| ||| |||||||||||||| |||||||||||    
T  23612781 tagccattgtgacacgttttaaacaatgtcgaat 23612748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 396 - 481
Target Start/End: Original strand, 17895273 - 17895358
Alignment:
Q  396 taaatactttcaaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    |||| |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  17895273 taaacacttacaaattagagttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 17895358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 415 - 481
Target Start/End: Original strand, 25595459 - 25595525
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25595459 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaacctcatc 25595525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 415 - 480
Target Start/End: Original strand, 33878013 - 33878078
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcat 480  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33878013 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaataaacctcat 33878078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 415 - 481
Target Start/End: Original strand, 25592274 - 25592340
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  25592274 gttcctaaaatcgtgtcacgaaatagtcatcgtaacacgttttaaccaatgtcgaatgaacctcatc 25592340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 401 - 480
Target Start/End: Complemental strand, 10663250 - 10663171
Alignment:
Q  401 actttcaaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcat 480  Q
    |||| ||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||| | ||||||||    
T  10663250 acttgcaaattaggattcctaaaatcgtgtcacgaaatatccatcgtgacacgttttaaccaatgtcgattgaacctcat 10663171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 415 - 481
Target Start/End: Original strand, 18722085 - 18722151
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||    
T  18722085 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccgatatcgaatgaacctcatc 18722151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 25595103 - 25595165
Alignment:
Q  18 ataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  25595103 ataaacaacatagtaaaaaaaataaaccgatagagtttcgtcgttgtcggcgttgctcctcaa 25595165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 418 - 483
Target Start/End: Original strand, 43682575 - 43682640
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcct 483  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||    
T  43682575 cctaaaatcgtgtcacgaaatagccgtcgtgacacgttttaaccaatgtcgaatgaacctcatcct 43682640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 415 - 488
Target Start/End: Original strand, 45156693 - 45156766
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||| ||||||||||| ||||    
T  45156693 gttcctaaaatcgtgtcacgaaatagccattgtgacacgttttaatcaatgtcgaatgaacctcatcctgtgct 45156766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 419 - 483
Target Start/End: Complemental strand, 20520173 - 20520109
Alignment:
Q  419 ctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcct 483  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  20520173 ctaaaatcgtgtcacgaaatagccattgtgacacgttttaaccaatgtcgaatgaacctcatcct 20520109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 18721727 - 18721789
Alignment:
Q  18 ataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||    
T  18721727 ataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgtcggcgttgctcctcaa 18721789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 25591919 - 25591976
Alignment:
Q  18 ataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctc 75  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  25591919 ataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgtcgacgttgctc 25591976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 418 - 481
Target Start/End: Complemental strand, 25228234 - 25228171
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    ||||||||||||||||||||||  |||||| ||||||||||||||||||||||| |||||||||    
T  25228234 cctaaaatcgtgtcacgaaataaccatcgtaacacgttttaaccaatgtcgaatgaacctcatc 25228171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 23613214 - 23613157
Alignment:
Q  18 ataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctc 75  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  23613214 ataaataacatagtaaagaaaataaaccgatagagtttcgtcgttgtcgacgttgctc 23613157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 18696385 - 18696448
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||  ||| |||||||||||    
T  18696385 aataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgatgactttgctcctcaa 18696448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 31984656 - 31984593
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||||||| | || ||||||||    
T  31984656 aataaacaacatagtaaagaaaataaaccgatagagcttcgtcgttgtcggctttactcctcaa 31984593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 5963914 - 5963855
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcc 76  Q
    ||||||||||||| ||||  |||||||||||||||||| |||||||| || | |||||||    
T  5963914 aataaacaacataataaagaaaataaaccgatagagttccgtcgttgccggctttgctcc 5963855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 30645134 - 30645103
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgat 48  Q
    ||||||||||||||||||||||||||||||||    
T  30645134 aataaacaacatagtaaaagaaataaaccgat 30645103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 31981021 - 31980958
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    |||||||||||||| |||  |||| ||||||||||| ||||||||||||| | || ||||||||    
T  31981021 aataaacaacataggaaagaaaattaaccgatagagcttcgtcgttgtcggctttactcctcaa 31980958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 45155715 - 45155799
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaaattaattc-caatcgctactgtt 102  Q
    ||||||||||||||||||  ||||||||  |||||||| |||||||| || | ||||||||| ||||| ||| ||||||||||||||    
T  45155715 aataaacaacatagtaaagaaaataaacatatagagttccgtcgttgccggc-ttgctcctc-aattacttctcaatcgctactgtt 45155799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 464
Target Start/End: Complemental strand, 30640734 - 30640685
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaat 464  Q
    |||| |||||||| |||||||||||  |||||| ||||||||||||||||    
T  30640734 gttcttaaaatcgcgtcacgaaatacacatcgttacacgttttaaccaat 30640685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 26865 - 26706
Alignment:
Q  18 ataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaaattaattccaatcgctactgttgatgaagttcttcta 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26865 ataaacaacatattaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaaattaattccaatcgctactgttgatgaagttcttcta 26766  T
Q  118 tgttcatgtgccttcccctctctcgtaacgcgtgcggcttcgttttcttcccaaaaccgt 177  Q
    |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||    
T  26765 tgttcatgtgccttcccctctctcgtgacacgtggggcttcgttttcttcccaaaaccgt 26706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 26467 - 26397
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||| ||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||    
T  26467 cctaaaaccgtgttacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 26397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 135; Significance: 4e-70; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 39192096 - 39191934
Alignment:
Q  24 aacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaaattaattccaatcgctactgttgatgaagttcttctatgttca 123  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  39192096 aacatagtaaaagaaataaatcgatagagtttcgtcgttgtcgacgttgctccttaaattaattccaatcgctattgttgatgaagttcttctatgttca 39191997  T
Q  124 tgtgccttcccctctctcgtaacgcgtgcggcttcgttttcttcccaaaaccgtaaaatgtga 186  Q
    |||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||    
T  39191996 tgtgccttcccctctctcgtgacgcgtgtggcttctttttcttcccaaaaccgtaaaacgtga 39191934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 366 - 481
Target Start/End: Original strand, 22937785 - 22937896
Alignment:
Q  366 cttttgtttaattcacaataccaaaataaataaatactttcaaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatg 465  Q
    |||||||||||||||||   ||| || || |||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  22937785 cttttgtttaattcaca---ccacaaaaagtaaa-acttccaaattagggttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaatcaatg 22937880  T
Q  466 tcgaataaacctcatc 481  Q
    |||||| |||||||||    
T  22937881 tcgaatgaacctcatc 22937896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 419 - 486
Target Start/End: Original strand, 28788179 - 28788246
Alignment:
Q  419 ctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatg 486  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28788179 ctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaataaacctcatcctatg 28788246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 32837305 - 32837235
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  32837305 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaaactcatcctatgct 32837235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 416 - 488
Target Start/End: Original strand, 21336497 - 21336569
Alignment:
Q  416 ttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||    
T  21336497 ttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 21336569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 416 - 483
Target Start/End: Original strand, 21827796 - 21827863
Alignment:
Q  416 ttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcct 483  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  21827796 ttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 21827863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 415 - 488
Target Start/End: Complemental strand, 37214991 - 37214918
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||    
T  37214991 gttcctaaaatcgtgtcacgaaatagccatcatgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 37214918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 407 - 471
Target Start/End: Original strand, 40916654 - 40916718
Alignment:
Q  407 aaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaat 471  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40916654 aaattaaggttcgtaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaat 40916718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 416 - 471
Target Start/End: Original strand, 21333481 - 21333536
Alignment:
Q  416 ttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaat 471  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21333481 ttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaat 21333536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 415 - 483
Target Start/End: Complemental strand, 39191556 - 39191488
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcct 483  Q
    |||| ||||||||||| ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  39191556 gttcttaaaatcgtgttacgaaatagacattgtgacacgttttaaccaatatcgaataaacctcatcct 39191488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 423 - 488
Target Start/End: Original strand, 14376638 - 14376702
Alignment:
Q  423 aatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||    
T  14376638 aatcgtgtcacgaaatagccatcgtgacacgttttaa-caatgtcgaatgaacctcatcctgtgct 14376702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 418 - 481
Target Start/End: Complemental strand, 42061708 - 42061645
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    ||||||||| |||||||||||||  ||||||||||| ||||||||||||||||| |||||||||    
T  42061708 cctaaaatcatgtcacgaaatagctatcgtgacacgatttaaccaatgtcgaatgaacctcatc 42061645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 43491015 - 43490945
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||||||| | ||| ||||||||||| ||||    
T  43491015 cctaaaatcgtgttacgaaatagacatcgtgatacgttttaaccaatgccaaatgaacctcatcctgtgct 43490945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 420 - 481
Target Start/End: Complemental strand, 31863092 - 31863031
Alignment:
Q  420 taaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    ||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||| |||||    
T  31863092 taaaatcgtgtcacgaaatagccatcgtgacacgatttaaacaatgtcgaatgaacttcatc 31863031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 420 - 488
Target Start/End: Original strand, 28441961 - 28442029
Alignment:
Q  420 taaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||||||||||| |||| |||||||||||| ||||||| || | ||||||||||| ||||    
T  28441961 taaaatcgtgtcacgaaatagccatcatgacacgttttagccaatgttgagtgaacctcatcctgtgct 28442029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 22937382 - 22937428
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttg 63  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||||    
T  22937382 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 22937428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 28441579 - 28441664
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaaattaattccaatcgctactgttg 103  Q
    |||||||||| |||||||  |||||||||||||||||| |||||||| ||  ||||||| ||||  ||||| |||||| ||||||||    
T  28441579 aataaacaacgtagtaaagaaaataaaccgatagagttccgtcgttgccggtgttgctcttcaatctaatt-caatcggtactgttg 28441664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 21333126 - 21333169
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcg 60  Q
    ||||||||||||||||||  |||||||||||||||||| |||||    
T  21333126 aataaacaacatagtaaagaaaataaaccgatagagttccgtcg 21333169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 21336142 - 21336185
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcg 60  Q
    ||||||||||||||||||  |||||||||||||||||| |||||    
T  21336142 aataaacaacatagtaaagaaaataaaccgatagagttccgtcg 21336185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 26547751 - 26547692
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcc 76  Q
    ||||||||||||| |||||  ||||||||||||||||| |||||||| || | |||||||    
T  26547751 aataaacaacataataaaaacaataaaccgatagagttccgtcgttgccggctttgctcc 26547692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 26551310 - 26551251
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcc 76  Q
    ||||||||||||| |||||  ||||||||||||||||| |||||||| || | |||||||    
T  26551310 aataaacaacataataaaaacaataaaccgatagagttccgtcgttgccggctttgctcc 26551251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 3194859 - 3194805
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgtt 71  Q
    ||||||||||||||||||  ||||||||||||||| || |||||||  |||||||    
T  3194859 aataaacaacatagtaaagaaaataaaccgatagaattccgtcgttaccgacgtt 3194805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 34653211 - 34653265
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgtt 71  Q
    ||||||||||||||||||  ||||||||||||||| || |||||||  |||||||    
T  34653211 aataaacaacatagtaaagaaaataaaccgatagaattccgtcgttaccgacgtt 34653265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 471
Target Start/End: Complemental strand, 7270463 - 7270399
Alignment:
Q  407 aaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaat 471  Q
    ||||||| ||| ||| ||||||||||||   | | |||||||||||||||| |||||||||||||    
T  7270463 aaattagagtttctataatcgtgtcacgtttttgccatcgtgacacgttttcaccaatgtcgaat 7270399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 396 - 488
Target Start/End: Original strand, 19861043 - 19861135
Alignment:
Q  396 taaatactttcaaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||| |||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||    
T  19861043 taaacacttacaaattagggttcctaaaatcgtgtcacgaaatagccatcttgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 19861135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 407 - 479
Target Start/End: Original strand, 33410729 - 33410801
Alignment:
Q  407 aaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctca 479  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  33410729 aaattagggttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctca 33410801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 366 - 481
Target Start/End: Original strand, 40617542 - 40617653
Alignment:
Q  366 cttttgtttaattcacaataccaaaataaataaatactttcaaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatg 465  Q
    |||||||||||||||||   ||| || || |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||| |||||    
T  40617542 cttttgtttaattcaca---ccacaaaaagtaaa-actttcaaattaaggttcctaaaatcgtgtcacgaaatagccatcgtgactcgttttaatcaatg 40617637  T
Q  466 tcgaataaacctcatc 481  Q
    |||||| |||||||||    
T  40617638 tcgaatgaacctcatc 40617653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 415 - 483
Target Start/End: Original strand, 3798571 - 3798639
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcct 483  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  3798571 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcct 3798639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 407 - 471
Target Start/End: Complemental strand, 27013463 - 27013399
Alignment:
Q  407 aaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaat 471  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27013463 aaattagggttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaat 27013399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 415 - 488
Target Start/End: Complemental strand, 15431389 - 15431316
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| ||||    
T  15431389 gttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcctgtgct 15431316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 415 - 488
Target Start/End: Complemental strand, 15438003 - 15437930
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| ||||    
T  15438003 gttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcctgtgct 15437930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 407 - 488
Target Start/End: Original strand, 19865410 - 19865491
Alignment:
Q  407 aaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||||||||||||||||||||||||||||||||| |||| |  |||||||||||||||||||||| ||||||||||| ||||    
T  19865410 aaattagggttcctaaaatcgtgtcacgaaatagccatcttagcacgttttaaccaatgtcgaatgaacctcatcctgtgct 19865491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 403 - 488
Target Start/End: Complemental strand, 53093957 - 53093873
Alignment:
Q  403 tttcaaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||||||||| ||||    
T  53093957 tttcaaattagggtttctaaaatcgtgtcacgaaatagccatcgtgacacgttct-accaatgtcgaatgaacctcatcctgtgct 53093873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 488
Target Start/End: Original strand, 37104039 - 37104109
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  37104039 cctaaaatcgtgtcacgaaatagccatcgtgacacgatttaaccaatgtcgaatgaacctcatcctgtgct 37104109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 414 - 483
Target Start/End: Complemental strand, 12237580 - 12237511
Alignment:
Q  414 ggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcct 483  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||| |||||||||||    
T  12237580 ggttcctaaaatcgtgtcacgaaatagccatcgtgacatattttaaccaatgtcgaatgaacctcatcct 12237511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 420 - 480
Target Start/End: Complemental strand, 5669848 - 5669788
Alignment:
Q  420 taaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcat 480  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  5669848 taaaatcgtgtcacgaaatagccaccgtgacacgttttaaccaatgtcgaataaacctcat 5669788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 418 - 481
Target Start/End: Complemental strand, 18910826 - 18910763
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||    
T  18910826 cctaaaatcgtgtcatgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 18910763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 418 - 488
Target Start/End: Original strand, 5721749 - 5721819
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  5721749 cctaaaatcgtgtcacgaaatagctatcgtgacacgatttaaccaatgtcgaatgaacctcatcctgtgct 5721819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 9717173 - 9717103
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||||  ||||||||||| ||||    
T  9717173 cctaaaatcgtgtcacgaaagagccatcgtgacacgatttaaccaatgtcgaacgaacctcatcctgtgct 9717103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 414 - 480
Target Start/End: Complemental strand, 49269960 - 49269895
Alignment:
Q  414 ggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcat 480  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| || |||||    
T  49269960 ggttcctaaaatcgtgtcacgaaatag-cattgtgacacgttttaaccaatgtcgaatgaatctcat 49269895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 415 - 488
Target Start/End: Complemental strand, 5680694 - 5680621
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||||||||||||||||| |||||||  |  |||||||||||||||||||||||||| |||||||| |||||||    
T  5680694 gttcctaaaatcgtgtcaagaaatagcaaaagtgacacgttttaaccaatgtcgaatgaacctcattctatgct 5680621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 11703043 - 11703106
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    ||||||||||||||||||  ||||||||||||||| |||||||| ||||| |||||||||||||    
T  11703043 aataaacaacatagtaaagaaaataaaccgatagaatttcgtcgatgtcggcgttgctcctcaa 11703106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 37103660 - 37103748
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaaattaattc-caatcgctactgttgat 105  Q
    ||||||||||||| ||||  ||||||||||||||||||||| ||||| || | ||||||||| | | ||||| |||||||||||||||||    
T  37103660 aataaacaacataataaagaaaataaaccgatagagtttcgccgttgccggctttgctcctc-agtcaattctcaatcgctactgttgat 37103748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 33400776 - 33400839
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    ||||||||||||||||||  ||||||| ||||||| | |||||||| |||||||||||| ||||    
T  33400776 aataaacaacatagtaaagaaaataaatcgatagaatctcgtcgttatcgacgttgctcttcaa 33400839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 40617138 - 40617185
Alignment:
Q  16 caataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttg 63  Q
    |||||||||||||||||||  |||||||||||||||||| ||||||||    
T  40617138 caataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 40617185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 471
Target Start/End: Original strand, 48014707 - 48014771
Alignment:
Q  407 aaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaat 471  Q
    ||||||||| | | ||||| |||||||||||||| |||| ||||||||||| | |||||||||||    
T  48014707 aaattagggcttccaaaattgtgtcacgaaatagccatcatgacacgttttcatcaatgtcgaat 48014771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 5681106 - 5681060
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttg 63  Q
    ||||||||| ||||||||  |||||||||||||||||| ||||||||    
T  5681106 aataaacaatatagtaaagaaaataaaccgatagagttccgtcgttg 5681060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 19864931 - 19864977
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttg 63  Q
    ||||||||| ||||||||  |||||||||||||||||| ||||||||    
T  19864931 aataaacaagatagtaaagaaaataaaccgatagagttccgtcgttg 19864977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 27013940 - 27013894
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttg 63  Q
    ||||||||||||||||||  ||||||| |||||||||| ||||||||    
T  27013940 aataaacaacatagtaaagaaaataaatcgatagagttccgtcgttg 27013894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 33410402 - 33410452
Alignment:
Q  30 gtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    |||||| |||||||||||||||||| ||||||| |||||| |||| |||||    
T  33410402 gtaaaaaaaataaaccgatagagttccgtcgttttcgacggtgcttctcaa 33410452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 7642771 - 7642831
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcct 77  Q
    ||||||||||||||||||| ||||||| ||||| |||| | |  ||| |||||||||||||    
T  7642771 aataaacaacatagtaaaaaaaataaatcgataaagttccataattgccgacgttgctcct 7642831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 471
Target Start/End: Complemental strand, 12782350 - 12782286
Alignment:
Q  407 aaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaat 471  Q
    ||||||||||| | | ||||||||||||   | | |||||||||||||||| |||||||||||||    
T  12782350 aaattagggtttccataatcgtgtcacgtttttgccatcgtgacacgttttcaccaatgtcgaat 12782286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 471
Target Start/End: Complemental strand, 19820175 - 19820111
Alignment:
Q  407 aaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaat 471  Q
    ||||||||||| | | ||||||||||||   | | |||||||||||||||| |||||||||||||    
T  19820175 aaattagggtttccataatcgtgtcacgtttttgccatcgtgacacgttttcaccaatgtcgaat 19820111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 471
Target Start/End: Complemental strand, 19826936 - 19826872
Alignment:
Q  407 aaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaat 471  Q
    ||||||||||| | | ||||||||||||   | | |||||||||||||||| |||||||||||||    
T  19826936 aaattagggtttccataatcgtgtcacgtttttgccatcgtgacacgttttcaccaatgtcgaat 19826872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 415 - 486
Target Start/End: Complemental strand, 10600188 - 10600117
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatg 486  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  10600188 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctatg 10600117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 415 - 488
Target Start/End: Complemental strand, 25873428 - 25873355
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  25873428 gttcctaaaatcgtgtcacgaaatagccatcgtgacacggtttaaccaatgtcgaatgaacctcatcctgtgct 25873355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 415 - 488
Target Start/End: Original strand, 38006061 - 38006134
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||    
T  38006061 gttcctgaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 38006134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 401 - 481
Target Start/End: Original strand, 25139801 - 25139881
Alignment:
Q  401 actttcaaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| ||| |||||||||    
T  25139801 acttccaaattagggttcctaaaatcgtgtcacgaaatagccattgtgacacgttttaactaatgtctaatgaacctcatc 25139881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 415 - 483
Target Start/End: Original strand, 25821692 - 25821760
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcct 483  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||    
T  25821692 gttcctaaaatcgtgtcacgaaatagccatcgtgacacattttaaccaatgtcgaatgaacctcatcct 25821760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 415 - 488
Target Start/End: Original strand, 36809210 - 36809283
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || |||||||| ||||    
T  36809210 gttcctaaaatcgtgtcacaaaatagccatcgtgacacgttttaaccaatgtcgaatgaatctcatcctgtgct 36809283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 26358894 - 26358824
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||| ||||| ||||||||||| ||||    
T  26358894 cctaaaatcgtgtcacgaaatagccatcgtgacacgatttaaccaatgccgaatgaacctcatcctgtgct 26358824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 29439797 - 29439727
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| ||||||| ||||    
T  29439797 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatatcgaatgaacttcatcctgtgct 29439727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 415 - 488
Target Start/End: Complemental strand, 25870060 - 25869987
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| ||| ||||||| ||||    
T  25870060 gttcctaaaatcgtatcacgaaatagccatcgtgacacgttttaatcaatgtcgaatgaacttcatcctgtgct 25869987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 419 - 475
Target Start/End: Complemental strand, 16788609 - 16788553
Alignment:
Q  419 ctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaac 475  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  16788609 ctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatatcgaataaac 16788553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 415 - 484
Target Start/End: Original strand, 30275467 - 30275535
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatccta 484  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||||||||||| || |||||||||    
T  30275467 gttcttaaaatcgtgtcacgaaataaccatcgtgacacgttttaaccaatgtcgaatgaa-ctcatccta 30275535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 1507093 - 1507155
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    ||||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||||||    
T  1507093 aataaacaacatagtaaga-aaataaaccgatagagtttcgtcgatgtcggcgttgctcctcaa 1507155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 15704429 - 15704492
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||  ||| |||||||||||    
T  15704429 aataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgatgactttgctcctcaa 15704492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 15719683 - 15719746
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||  ||| |||||||||||    
T  15719683 aataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgatgactttgctcctcaa 15719746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 26365592 - 26365504
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaaattaattc-caatcgctactgttgat 105  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||||||  | ||||||||| | | ||||| |||||||||||||||||    
T  26365592 aataaacaacataataaaaaaaataaaccgatagagtttcatcgttgtcagctttgctcctc-agtcaattctcaatcgctactgttgat 26365504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 407 - 471
Target Start/End: Complemental strand, 30925984 - 30925920
Alignment:
Q  407 aaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaat 471  Q
    |||||||||||||| ||||||||||||||| ||| ||||||||||||||||   |||||||||||    
T  30925984 aaattagggttcctgaaatcgtgtcacgaattagccatcgtgacacgttttgctcaatgtcgaat 30925920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 1503889 - 1503951
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    ||||||||||||||||| | ||||||| |||||||||||||||| ||||| |||||||||||||    
T  1503889 aataaacaacatagtaaga-aaataaatcgatagagtttcgtcgatgtcggcgttgctcctcaa 1503951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 38005628 - 38005691
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    ||||||||||||||||||  |||||||||||||||||| |||||||| || | || ||||||||    
T  38005628 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttgccggctttactcctcaa 38005691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 29435411 - 29435365
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttg 63  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||||    
T  29435411 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 29435365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 4577512 - 4577449
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    ||||||||||||||||||  ||||||| |||||||| |||||||||| || | || ||||||||    
T  4577512 aataaacaacatagtaaagaaaataaatcgatagagcttcgtcgttgccggctttactcctcaa 4577449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 415 - 488
Target Start/End: Original strand, 1951120 - 1951193
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  1951120 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccactgtcgaatgaacctcatcctatgct 1951193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 415 - 488
Target Start/End: Original strand, 49499343 - 49499416
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||    
T  49499343 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcatatgct 49499416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 2793521 - 2793451
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||    
T  2793521 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgct 2793451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 42021945 - 42021875
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| |||||    
T  42021945 cctaaaatcgtgtcacgaaatagccatcgtaacacgttttaaccaatgtcgaatgaacctcatccgatgct 42021875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 406 - 488
Target Start/End: Original strand, 34733030 - 34733111
Alignment:
Q  406 caaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||| | ||||||||||| ||||||||||||| ||||||||||| |||| ||||||||||||| ||||||||||| ||||    
T  34733030 caaattatgtttcctaaaatcatgtcacgaaatagccatcgtgacacatttt-accaatgtcgaatgaacctcatcctgtgct 34733111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 488
Target Start/End: Original strand, 29644086 - 29644156
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||| ||||||||||||| |||||| |||||||||| |||||||||||| || |||||||| ||||    
T  29644086 cctaaaatcatgtcacgaaatagccatcgtaacacgttttagccaatgtcgaatgaatctcatcctgtgct 29644156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 49716031 - 49715985
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttg 63  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||||    
T  49716031 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 49715985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 49719514 - 49719468
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttg 63  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||||    
T  49719514 aataaacaacatagtaaagaaaataaaccgatagagttccgtcgttg 49719468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 141
Target Start/End: Complemental strand, 30604713 - 30604682
Alignment:
Q  110 ttcttctatgttcatgtgccttcccctctctc 141  Q
    ||||||||||||||||||||||||||||||||    
T  30604713 ttcttctatgttcatgtgccttcccctctctc 30604682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 1950901 - 1950945
Alignment:
Q  19 taaacaacatagtaaaagaaataaaccgatagagtttcgtcgttg 63  Q
    ||||||||||||||||  ||||||||| |||||||| ||||||||    
T  1950901 taaacaacatagtaaagaaaataaaccaatagagttccgtcgttg 1950945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 407 - 471
Target Start/End: Original strand, 6320 - 6384
Alignment:
Q  407 aaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaat 471  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6320 aaattagggttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaat 6384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 5844 - 5890
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttg 63  Q
    ||||||||||||||||||  ||||||| |||||||||| ||||||||    
T  5844 aataaacaacatagtaaagaaaataaatcgatagagttccgtcgttg 5890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 414 - 481
Target Start/End: Complemental strand, 61823 - 61756
Alignment:
Q  414 ggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  61823 ggttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 61756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 415 - 486
Target Start/End: Original strand, 45287912 - 45287983
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatg 486  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  45287912 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatcttatg 45287983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 415 - 486
Target Start/End: Original strand, 45291248 - 45291319
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatg 486  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||    
T  45291248 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcattctatg 45291319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 418 - 481
Target Start/End: Complemental strand, 8276234 - 8276171
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  8276234 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaacctcatc 8276171  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 418 - 481
Target Start/End: Complemental strand, 26556732 - 26556669
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatc 481  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26556732 cctaaaatcgtgtcatgaaatagccatcgtgacacgttttaaccaatgtcgaataaacctcatc 26556669  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 10431608 - 10431538
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||| | ||||||||||| ||||    
T  10431608 cctaaaatcgtgtcacgaaatagccatcgtgacacgttttagccaatgtcgagtgaacctcatcctgtgct 10431538  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 415 - 488
Target Start/End: Complemental strand, 4542298 - 4542226
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||| |||||||||||||  |||||||||| ||||||||||||||||||| || |||||||||||||    
T  4542298 gttcctaaaattgtgtcacgaaatatccatcgtgacaagttttaaccaatgtcgaatgaa-ctcatcctatgct 4542226  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 488
Target Start/End: Original strand, 2442056 - 2442125
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||||||||||||| |||||||| |||||||| |||||||||| | || |||||||||||||    
T  2442056 cctaaaatcgtgtcacgaaatagccatcgtgatacgttttagccaatgtcgagtgaa-ctcatcctatgct 2442125  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 457
Target Start/End: Original strand, 13810180 - 13810231
Alignment:
Q  406 caaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgtttt 457  Q
    ||||||||||||||| ||||||||| || |||||||||||||||||||||||    
T  13810180 caaattagggttcctgaaatcgtgtaaccaaatagtcatcgtgacacgtttt 13810231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 22233094 - 22233154
Alignment:
Q  20 aaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    |||||||||| ||||| |||||||||||||||||||| ||| | ||| |||||||||||||    
T  22233094 aaacaacataataaaaaaaataaaccgatagagtttcatcgatatcggcgttgctcctcaa 22233154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 22253645 - 22253585
Alignment:
Q  20 aaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    |||||||||| ||||| |||||||||||||||||||| ||| | ||| |||||||||||||    
T  22253645 aaacaacataataaaaaaaataaaccgatagagtttcatcgatatcggcgttgctcctcaa 22253585  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 11825816 - 11825875
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcc 76  Q
    ||||||||||||| ||||  |||||||||||||||||| |||||||| || | |||||||    
T  11825816 aataaacaacataataaagaaaataaaccgatagagttccgtcgttgccggctttgctcc 11825875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 44109034 - 44109085
Alignment:
Q  24 aacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctc 75  Q
    |||||||||||  || ||||| |||||||||| |||||||||||||||||||    
T  44109034 aacatagtaaagaaattaaactgatagagttttgtcgttgtcgacgttgctc 44109085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 471
Target Start/End: Complemental strand, 17730249 - 17730185
Alignment:
Q  407 aaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaat 471  Q
    ||||||||||| | | ||||||||||||   | | |||||||||||||||| |||||||||||||    
T  17730249 aaattagggtttccataatcgtgtcacgtttttgccatcgtgacacgtttttaccaatgtcgaat 17730185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 22256915 - 22256875
Alignment:
Q  20 aaacaacatagtaaaagaaataaaccgatagagtttcgtcg 60  Q
    |||||||||| ||||  ||||||||||||||||||||||||    
T  22256915 aaacaacataataaagaaaataaaccgatagagtttcgtcg 22256875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 415 - 482
Target Start/End: Original strand, 834 - 901
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcc 482  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||    
T  834 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaaccttatcc 901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 415 - 482
Target Start/End: Original strand, 4194 - 4261
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcc 482  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||    
T  4194 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaaccttatcc 4261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 415 - 482
Target Start/End: Original strand, 11324 - 11391
Alignment:
Q  415 gttcctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcc 482  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||    
T  11324 gttcctaaaatcgtgtcacgaaatagccatcgtgacacgttttaaccaatgtcgaatgaaccttatcc 11391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 291185 - 291115
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  291185 cctaaaatcgtgttacgaaatagtcatcgtgacacgttttaaccaatgtcgaatgaaccttatcctgtgct 291115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 197453 - 197383
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaataaacctcatcctatgct 488  Q
    ||||||||||||||| ||||||| ||||||||||| |||||| ||||||||||| ||||||||||| ||||    
T  197453 cctaaaatcgtgtcatgaaatagccatcgtgacacattttaatcaatgtcgaatgaacctcatcctgtgct 197383  T

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Target: scaffold0062 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 53341 - 53404
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||  ||| |||||||||||    
T  53341 aataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgatgactttgctcctcaa 53404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 68240 - 68303
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||  ||| |||||||||||    
T  68240 aataaacaacatagtaaagaaaataaaccgatagagtttcgtcgttgatgactttgctcctcaa 68303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 227014 - 226951
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||||||| | || ||||||||    
T  227014 aataaacaacatagtaaagaaaataaaccgatagagcttcgtcgttgtcggctttactcctcaa 226951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 13268 - 13222
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttg 63  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||||    
T  13268 aataaacaacatagtaaagaaaataaaccgatagagcttcgtcgttg 13222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 27284 - 27238
Alignment:
Q  17 aataaacaacatagtaaaagaaataaaccgatagagtttcgtcgttg 63  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||||    
T  27284 aataaacaacatagtaaagaaaataaaccgatagagcttcgtcgttg 27238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 19716 - 19672
Alignment:
Q  19 taaacaacatagtaaaagaaataaaccgatagagtttcgtcgttg 63  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||    
T  19716 taaacaacatagtaaagaaaataaaccgatagagcttcgtcgttg 19672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 457
Target Start/End: Original strand, 34989 - 35039
Alignment:
Q  407 aaattagggttcctaaaatcgtgtcacgaaatagtcatcgtgacacgtttt 457  Q
    |||||||||||||| |||||||||||||||||||||| ||| ||| |||||    
T  34989 aaattagggttcctgaaatcgtgtcacgaaatagtcagcgttacatgtttt 35039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 2138 - 2078
Alignment:
Q  20 aaacaacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctcctcaa 80  Q
    |||||||||| ||||  |||||||||||||||||| |||||||| ||| ||||||| ||||    
T  2138 aaacaacataataaagaaaataaaccgatagagttccgtcgttgccgatgttgctcttcaa 2078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 5963 - 5913
Alignment:
Q  24 aacatagtaaaagaaataaaccgatagagtttcgtcgttgtcgacgttgctc 75  Q
    |||||||||||| |||||||||||||||||| |||||||| ||| |||||||    
T  5963 aacatagtaaaa-aaataaaccgatagagttccgtcgttgccgatgttgctc 5913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 470
Target Start/End: Original strand, 3624 - 3676
Alignment:
Q  418 cctaaaatcgtgtcacgaaatagtcatcgtgacacgttttaaccaatgtcgaa 470  Q
    ||||||||||||||||||  | ||||||||||||||||||   ||||||||||    
T  3624 cctaaaatcgtgtcacgattttgtcatcgtgacacgttttcctcaatgtcgaa 3676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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