View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9568_low_10 (Length: 364)
Name: NF9568_low_10
Description: NF9568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9568_low_10 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 84 - 359
Target Start/End: Complemental strand, 38591563 - 38591288
Alignment:
| Q |
84 |
aatagagttgaagtttgtaatttctgaaggttgaatacacgaacaaagaactaaagcacctagggtttttgaagatcgctgctattcatacttatgtgtt |
183 |
Q |
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| T |
38591563 |
aatagagttgaagtttgtaatttctgaaggttgaatacacgaacaaagaactaaagcacctagggtttttgaagatcgctgctattcatacttatgtgtt |
38591464 |
T |
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| Q |
184 |
tatctcatatctgtatgaatccgctaagaagaactcgggacctttgagatccgttgttgaaacagtggagggaaccgtaaccactgttgttggtcctgcc |
283 |
Q |
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| T |
38591463 |
tatctcatatctgtatgaatccgctaagaagaacgcgggacctttgagatccgttgttgaaacagtggagggagccgtaaccactgttgttggtcctgtc |
38591364 |
T |
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| Q |
284 |
tacaacaaattcaaggacgtccctgatgatgtccttgtttttgttgacaacaaggtgattttctctccctttgctt |
359 |
Q |
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| T |
38591363 |
tacaacaaattcaaggacgtccctgatgatgtccttgtttttgttgacaacaaggtgattttctctccctttgctt |
38591288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 84 - 348
Target Start/End: Complemental strand, 38578616 - 38578352
Alignment:
| Q |
84 |
aatagagttgaagtttgtaatttctgaaggttgaatacacgaacaaagaactaaagcacctagggtttttgaagatcgctgctattcatacttatgtgtt |
183 |
Q |
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| T |
38578616 |
aatagagttgaagtttgtaatttctgaaggttgagaacaagaacaaagaactaaagcgccttgggtttgtgaagatcgctgctattcatacttatgtgtt |
38578517 |
T |
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| Q |
184 |
tatctcatatctgtatgaatccgctaagaagaactcgggacctttgagatccgttgttgaaacagtggagggaaccgtaaccactgttgttggtcctgcc |
283 |
Q |
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| T |
38578516 |
tgtctcatatctgtatgaatccgctaagaagaactcgggacctttgagatccgctgttgaaacagtggagggaaccgtaaccactgttgttggtcccgtc |
38578417 |
T |
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| Q |
284 |
tacaacaaattcaaggacgtccctgatgatgtccttgtttttgttgacaacaaggtgattttctc |
348 |
Q |
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| T |
38578416 |
tacaacaaattcaaggacgtccctgatgatgtccttgtgtttgttgacaacaaggtaattctctc |
38578352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 12533021 - 12532969
Alignment:
| Q |
161 |
gctgctattcatacttatgtgtttatctcatatctgtatgaatccgctaagaa |
213 |
Q |
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| T |
12533021 |
gctgctattcaaacttatgtgtttgtctcatatttatatgaatcagctaagaa |
12532969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 30444 - 30496
Alignment:
| Q |
161 |
gctgctattcatacttatgtgtttatctcatatctgtatgaatccgctaagaa |
213 |
Q |
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| T |
30444 |
gctgctattcaaacttatgtgtttgtctcatatttatatgaatcagctaagaa |
30496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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