View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9568_low_11 (Length: 355)
Name: NF9568_low_11
Description: NF9568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9568_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 24 - 341
Target Start/End: Original strand, 52512413 - 52512731
Alignment:
| Q |
24 |
ctatatgaatgcaattaattaagttaatgatgag----tgagtgagtaattgaaattgaattgaaactcgtatataaacatacatacataccttggagga |
119 |
Q |
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| T |
52512413 |
ctatatgaatgcaattaattaagttaatgatgagtgagtgagtgagtaattgaaattgaattgaaactcatatataaacatacatacataccttggagga |
52512512 |
T |
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| Q |
120 |
agaatgatatccttgattttgaggaagagtggatttaacaataaaacaacgcgtccttcctgtttgtttgatggaagttggaggaaggcatcgaggaata |
219 |
Q |
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| T |
52512513 |
agaatgatatccttgattttgaggaagagtggatttaacaataaaacaacgcgtccttcctgtttgtttgatggaagttggaggaaggcatcgaggaata |
52512612 |
T |
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| Q |
220 |
acagacgcctgcaaattgcaatccattgagatatgaagaatagagnnnnnnnnnnnnnnnnnnnnnnatgatgatgataagttcgttgtacagtgtcaac |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
52512613 |
acagacgcctgcaaattgcaatccattgagatatgaagaatagag---tgtgttgttgttgatgatgatgatgatgataagttcgttgtacagtgtcaac |
52512709 |
T |
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| Q |
320 |
aaatggactccaatccacaggt |
341 |
Q |
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|||||||||||||||||||||| |
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| T |
52512710 |
aaatggactccaatccacaggt |
52512731 |
T |
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