View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9568_low_15 (Length: 325)
Name: NF9568_low_15
Description: NF9568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9568_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 96 - 324
Target Start/End: Original strand, 17124260 - 17124487
Alignment:
| Q |
96 |
gtgtctgtggttcataggatagagcagagttttgccatttacattgatccacctagctcaatgatccagacaaaaacaaattctcatagataatgtttgt |
195 |
Q |
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| T |
17124260 |
gtgtccgtggttcataggatagagcagagttttgccatttacattgatcc-cctagctcaatgattcagacaaaaacaaattctcatagataatgtttgt |
17124358 |
T |
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| Q |
196 |
tgatgcagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctcaagg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17124359 |
tgatgcagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctcaagg |
17124458 |
T |
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| Q |
296 |
aaaagtaataaatgatatttatttttatg |
324 |
Q |
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| T |
17124459 |
aaaagtaataaatgatatttatttttatg |
17124487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 306
Target Start/End: Complemental strand, 42990257 - 42990152
Alignment:
| Q |
201 |
cagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctcaaggaaaag |
300 |
Q |
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| T |
42990257 |
cagatgtggccagatcttatacagaaagctaaggaaggtggtttggatgtgattcagacttatgttttttggaatggacatgaaccttcacctggcaaag |
42990158 |
T |
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| Q |
301 |
taataa |
306 |
Q |
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|||||| |
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| T |
42990157 |
taataa |
42990152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 17124198 - 17124230
Alignment:
| Q |
65 |
gagaaaattacataattaagtgaaattatatgt |
97 |
Q |
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| T |
17124198 |
gagaaaattacataattaagtgtaattatatgt |
17124230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 188 - 319
Target Start/End: Original strand, 5229489 - 5229619
Alignment:
| Q |
188 |
atgtttgttgatgcagatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaacct |
287 |
Q |
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|||||| || ||||||||||||||||| ||| | |||||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||||||| ||| |
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| T |
5229489 |
atgtttcttaatgcagatgtggccagacttatttcaaaaggctaaagatggaggccttgatgttattcaaacatatgtattttggaatggacatgagcct |
5229588 |
T |
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| Q |
288 |
tctcaaggaaaagtaataaatgatatttattt |
319 |
Q |
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| T |
5229589 |
tctcctggaaatgtaatgaa-gatatttattt |
5229619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 5450729 - 5450816
Alignment:
| Q |
202 |
agatgtggccagatttaatacaaaaggctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttc |
289 |
Q |
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| T |
5450729 |
agatgtggccagatcttatccagaaggctaaagaaggaggattggatgtgattcaaacctatgttttctggaatggacatgaaccttc |
5450816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 8142484 - 8142421
Alignment:
| Q |
228 |
gctaaagatggaggtgttgatgtgattgaaacctatgtattttggaatggacatgaaccttctc |
291 |
Q |
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|||||||| |||||| | ||||| |||||||||||||| |||||||||| ||||||||||||| |
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| T |
8142484 |
gctaaagaaggaggtttggatgtaattgaaacctatgtgttttggaatgttcatgaaccttctc |
8142421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 27144484 - 27144528
Alignment:
| Q |
69 |
aaattacataattaagtgaaattatatgtgtctgtggttcatagg |
113 |
Q |
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|||| |||||||| |||| ||||||||||||||||| |||||||| |
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| T |
27144484 |
aaatcacataatttagtgtaattatatgtgtctgtgcttcatagg |
27144528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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