View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9568_low_17 (Length: 324)
Name: NF9568_low_17
Description: NF9568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9568_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 12693208 - 12692901
Alignment:
| Q |
1 |
tctagctttaaaccactaggttgtgtggagcagacctttctatagcatcgaaatcaaaattagtataaaatacaactaaatgaattctttgatatttcaa |
100 |
Q |
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| T |
12693208 |
tctagctttaaaccactagtttgtgtggagcagacctttctataacatcgaaatcaaaattagtataaaatacaactaaatgaattctttgatatttcaa |
12693109 |
T |
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| Q |
101 |
ttgctctcagaagctcgtacaaaagaacattttcactgtatgaaagacaaataacaattgaagcttcgtttccaaaatctttaaaaacaacgattccaac |
200 |
Q |
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| T |
12693108 |
ttgctctcagaagctcgtacaaaagaacattttcactgtatgaaagacaaataacaattgaagcatcgttttcaaaatctttaaaaacaacgattccaac |
12693009 |
T |
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| Q |
201 |
tacgatatgaaaatctttcaatccaattgctggtatcctcaccttccgaagtaataaccaccatgatgtttatatgtagtacatgaaatcaaacattatg |
300 |
Q |
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| T |
12693008 |
tacgatatggcaatctttcaatccaattgctggtatcctcaccgtctgaagtaataaccaccatgatgtttatatgtagtacatgaaatcaaacattatg |
12692909 |
T |
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| Q |
301 |
ttgatttt |
308 |
Q |
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|||||||| |
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| T |
12692908 |
ttgatttt |
12692901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 12689366 - 12689431
Alignment:
| Q |
1 |
tctagctttaaaccactaggttgtgtggagcagacctttctatagcatcgaaatcaaaattagtat |
66 |
Q |
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| T |
12689366 |
tctagcttttaaccactaggttgtgtggagcacaccttcctataacattgaattcaaaattagtat |
12689431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 12696078 - 12696164
Alignment:
| Q |
1 |
tctagctttaaaccactaggttgtgtggagcagacctttctatagcatcgaaatcaaaattagtataaaatacaactaaatgaattc |
87 |
Q |
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||||||||| |||||||||||||||||||||| || || ||||| ||| || ||||||||||||| | | ||||||||||||||| |
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| T |
12696078 |
tctagctttcaaccactaggttgtgtggagcacacgttactataacattgatttcaaaattagtattgactccaactaaatgaattc |
12696164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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